PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf05710g02007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 194aa MW: 22167.8 Da PI: 7.2724 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.5 | 7.1e-09 | 24 | 47 | 23 | 47 |
-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47 +W++Ia +++ gRt++++k++w+++ Niben101Scf05710g02007.1 24 RWSLIAGRLP-GRTDNEIKNYWNTH 47 4*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 9.36E-12 | 3 | 55 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.85 | 9 | 52 | IPR017930 | Myb domain |
SMART | SM00717 | 2.6E-5 | 13 | 50 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.63E-9 | 16 | 48 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-12 | 21 | 65 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.1E-6 | 23 | 47 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MGRSPCCEKA HTNKGAWTKE EDERWSLIAG RLPGRTDNEI KNYWNTHIRR KLLSRGIDPT 60 THRPINEPNT TPKVTTISFT VPNIKDEEDQ KMINVKGELS GLSQEDEIST NSSQFQELQC 120 PDLNLELRIS PPYQQNYQND QDLKQSPRCF ACSLGIQNSK DCNCSKNNMV NIASYDFLGL 180 KTKGVLDYRT LETK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019260747.1 | 1e-124 | PREDICTED: myb-related protein 308-like | ||||
Swissprot | P81393 | 3e-51 | MYB08_ANTMA; Myb-related protein 308 | ||||
TrEMBL | A0A314LEE7 | 1e-123 | A0A314LEE7_NICAT; Transcription repressor myb4 | ||||
STRING | XP_009804432.1 | 1e-121 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 1e-47 | myb domain protein 4 |
Publications ? help Back to Top | |||
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