PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05583g00009.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 488aa    MW: 54613.2 Da    PI: 5.8214
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05583g00009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.59.4e-13150172426
                               ---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                               + C ++++tGtCkyG +CkF+H+
  Niben101Scf05583g00009.1 150 ADCAYYMKTGTCKYGLNCKFNHP 172
                               68********************8 PP
2zf-CCCH27.26.7e-09199221527
                               --SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                               +C++++  G CkyG++Ck+ H++
  Niben101Scf05583g00009.1 199 ECKYYLTEGGCKYGNTCKYYHSR 221
                               7********************95 PP
3zf-CCCH40.83.7e-13242266226
                               -S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                               +++ C++++rtG CkyG++C+F+H+
  Niben101Scf05583g00009.1 242 GEKDCPYYMRTGSCKYGSNCRFHHP 266
                               7889********************9 PP
4zf-CCCH31.43.2e-10378404127
                               --S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                               ++++ C++f +tG Cky + CkF+H++
  Niben101Scf05583g00009.1 378 PGQPDCSYFIKTGDCKYRSDCKFHHPK 404
                               5789*********************96 PP
5zf-CCCH37.34.6e-12425450227
                               -S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                               +++ C+f++r+G+Ck+G+ CkF H++
  Niben101Scf05583g00009.1 425 DQAVCSFYSRYGICKFGPACKFDHPE 450
                               6789********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.1E-4146173IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.619146174IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-6148175IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-10150172IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-5152171IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.826194222IPR000571Zinc finger, CCCH-type
SMARTSM003560.0042194221IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5199222IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-6199221IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-5200221IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.718240268IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-7240267IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-7242268IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-10242266IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-6246265IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.563377405IPR000571Zinc finger, CCCH-type
SMARTSM003560.0011377404IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-5379404IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-5382406IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5422448IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.14423451IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-6423450IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-9425450IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MEAIESQQHI QNLNDSTLEK QDLGLDPQPL FSSDPSVQNP PQNLPDAVEN DDDDEIALQF  60
ICRELQGLVL NQAYIEERSQ GKNHEENGRE KSETECGDNY YGVGDYAWSE NGNADENDVE  120
NENSDVASSK QWGFNGNRKV LNYPLIPDAA DCAYYMKTGT CKYGLNCKFN HPSRRRNQQW  180
AMEKGKQKDE SEERAGQIEC KYYLTEGGCK YGNTCKYYHS RRKGAISPVL NINFLGLPIR  240
PGEKDCPYYM RTGSCKYGSN CRFHHPDPST VAGVDPSSGY NNGGSAPVKS APYSTESSWS  300
SPRALNETAS FVPVVYPASQ RIPPLSPQWN GYLAPVYPTS GKSLLTPPAF TIKDPATKTN  360
FYTQAQQHWL VEEYPERPGQ PDCSYFIKTG DCKYRSDCKF HHPKNQTSKT NMSALNDKGL  420
PLRPDQAVCS FYSRYGICKF GPACKFDHPE HYDNSGSSVG SVFDQPPFGN SATSYGSRWR  480
GKETEVAL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019239155.10.0PREDICTED: zinc finger CCCH domain-containing protein 67-like isoform X1
SwissprotQ5RJC51e-110C3H67_ARATH; Zinc finger CCCH domain-containing protein 67
TrEMBLA0A1J6JU340.0A0A1J6JU34_NICAT; Zinc finger ccch domain-containing protein 67
STRINGXP_009803257.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44682343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.11e-112C3H family protein