PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05553g04001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 269aa    MW: 30681.8 Da    PI: 8.6454
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05553g04001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.21.6e-06113132120
                               EEETTTTEEESSHHHHHHHH CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                               ++C++C+k+F+r  nL+ H+
  Niben101Scf05553g04001.1 113 FSCHICHKTFNRYNNLQMHM 132
                               89*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.23E-5108135No hitNo description
Gene3DG3DSA:3.30.160.601.7E-4113132IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.55113135IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.388113140IPR007087Zinc finger, C2H2
PROSITE patternPS000280115135IPR007087Zinc finger, C2H2
SMARTSM00355100160192IPR015880Zinc finger, C2H2-like
SMARTSM00355150197217IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009813Biological Processflavonoid biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MERLYLASSS SVENQIETFD FFAEKNQNAF EFLSLSQPSE KEIRLSNDQE NPNSCNWPDK  60
EDDVTVALHI GLPNFSKAST NIPNDLTKGD ANIAAINYWI PTPSQILVGF TQFSCHICHK  120
TFNRYNNLQM HMWGHGSQYR KGPESLKGTQ PRAMLGIPCY CCEEGCKNNI NHPRAKLLKD  180
FRTLQTHYKR KHGTKRFACR KCGKCLAVKG DWRTHEKNCG KRWLCICGSD FKHKRSLKDH  240
IASFGEGHGP CPPNSFEGVE VQKTYSVFV
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269|PubMed:11782451, ECO:0000269|PubMed:21477081}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009761488.10.0PREDICTED: protein TRANSPARENT TESTA 1
RefseqXP_016490796.10.0PREDICTED: protein TRANSPARENT TESTA 1-like
SwissprotQ8VWG31e-107TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBLA0A1S4BPL10.0A0A1S4BPL1_TOBAC; protein TRANSPARENT TESTA 1-like
TrEMBLA0A1U7V5310.0A0A1U7V531_NICSY; protein TRANSPARENT TESTA 1
STRINGXP_009761488.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA132641517
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34790.11e-109C2H2 family protein
Publications ? help Back to Top
  1. Lian J, et al.
    Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus.
    Plant Sci., 2017. 254: p. 32-47
    [PMID:27964783]