PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05552g10004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 440aa    MW: 48458.7 Da    PI: 7.6012
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05552g10004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.42.5e-08119139526
                               --SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                C+++ + G C yG++C+F H+
  Niben101Scf05552g10004.1 119 VCNYWVK-GNCTYGNTCRFLHS 139
                               7******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.482550IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.2772551IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.788114141IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.81E-7115139IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-5116140IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-6118139IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-6118139IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.101.3E-15140252IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003203.1E-6145184IPR001680WD40 repeat
SuperFamilySSF509782.56E-44147434IPR017986WD40-repeat-containing domain
PfamPF004008.4E-6148184IPR001680WD40 repeat
PROSITE profilePS5008214.084152193IPR001680WD40 repeat
PROSITE profilePS5029419.222152400IPR017986WD40-repeat-containing domain
PRINTSPR003208.4E-7171185IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780171185IPR019775WD40 repeat, conserved site
SMARTSM00320170224260IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.102.0E-30253434IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003200.018267304IPR001680WD40 repeat
PROSITE profilePS5008211.912274313IPR001680WD40 repeat
PfamPF004000.032275304IPR001680WD40 repeat
PROSITE patternPS006780291305IPR019775WD40 repeat, conserved site
PRINTSPR003208.4E-7291305IPR020472G-protein beta WD-40 repeat
SMARTSM003201.2E-4307344IPR001680WD40 repeat
PfamPF004002.9E-4309343IPR001680WD40 repeat
PRINTSPR003208.4E-7331345IPR020472G-protein beta WD-40 repeat
SMARTSM003200.51348391IPR001680WD40 repeat
SMARTSM003209.9394431IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MDMDGSKRIF QRLGPHSQGG DNNSNKQQKV CFHWRAGRCN RFPCPFLHRE LPAPLHQQQQ  60
QPHNGMPSSS SKRPHAFSSD YDNRGSAGGG GMRRNPNFNN TWGRTAAGGG AAVRKMEKVC  120
NYWVKGNCTY GNTCRFLHSW TTGDCFTLLT QLEGHQKVVT GIALPSGSDK LYSGSTDKTV  180
RVWDCQSGQC AGVVNFDGEV GCMLSEGPWI FVGLTNLVKA WNTQTGTDLS LDGPVGQVYA  240
LVVGNDMLLA GTEDGILAWK YNGSTNCFEP AAQLKEHTHH VVSLVVGANR LYSGSMDNSI  300
RVWNLETMQC LQILTGHTSV VMSVLCWDQF LLSCSLDQTI KVWAANESGN LEVTYTHQEE  360
KGVLALCGMH DSEAKPVLLC SCNDKTIRVY DLPSFSERGK IFSKEVVRRI EIGPGGLFFT  420
GDESGQLRVW KWLTESNSTA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A2e-201493948323Tako8
6g6n_A2e-201493948323Tako8
6g6n_B2e-201493948323Tako8
6g6n_C2e-201493948323Tako8
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009803802.10.0PREDICTED: zinc finger CCCH domain-containing protein 48
RefseqXP_016511012.10.0PREDICTED: zinc finger CCCH domain-containing protein 48
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A1S4DC520.0A0A1S4DC52_TOBAC; zinc finger CCCH domain-containing protein 48
TrEMBLA0A1U7YI650.0A0A1U7YI65_NICSY; zinc finger CCCH domain-containing protein 48
STRINGXP_009803802.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28842134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1