PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05543g01003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 306aa    MW: 34928 Da    PI: 4.5231
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05543g01003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.71.1e-1983136356
                               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                               k++++t +ql+ Le+ Fe ++++  e++ +LAk+lgL+ rq+ +WFqNrRa+++
  Niben101Scf05543g01003.1  83 KKRRLTVDQLQFLEKSFEVENKLEPERKDQLAKELGLQPRQIAIWFQNRRARWR 136
                               56689************************************************9 PP
2HD-ZIP_I/II126.89.7e-4183173292
               HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                               kkrrl+ +q+++LE+sFe e+kLeperK +la+eLglqprq+a+WFqnrRAR++tkqlE+dyeaL+++yd+lk++  +L ke+++
  Niben101Scf05543g01003.1  83 KKRRLTVDQLQFLEKSFEVENKLEPERKDQLAKELGLQPRQIAIWFQNRRARWRTKQLENDYEALRNKYDNLKADYINLLKEKDD 167
                               9************************************************************************************ PP

               HD-ZIP_I/II  87 Lreelk 92 
                               Lr+++ 
  Niben101Scf05543g01003.1 168 LRAQVI 173
                               **9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.57278138IPR001356Homeobox domain
SMARTSM003892.9E-1981142IPR001356Homeobox domain
SuperFamilySSF466892.65E-1981149IPR009057Homeodomain-like
CDDcd000868.47E-1983139No hitNo description
PfamPF000464.8E-1783136IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-2085145IPR009057Homeodomain-like
PRINTSPR000317.2E-6109118IPR000047Helix-turn-helix motif
PROSITE patternPS000270113136IPR017970Homeobox, conserved site
PRINTSPR000317.2E-6118134IPR000047Helix-turn-helix motif
PfamPF021832.4E-11138178IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MAGPELFYGD AAGFNGILLQ NQRLMSSFAT KKAVGSPASF LASGSMVSFR GVNGGNKSDR  60
SFCQSVEENE TDELEEYLHQ PDKKRRLTVD QLQFLEKSFE VENKLEPERK DQLAKELGLQ  120
PRQIAIWFQN RRARWRTKQL ENDYEALRNK YDNLKADYIN LLKEKDDLRA QVIQCTDMLL  180
HKEKEKGELA TSDIKELSDA SPKENMIDPV LEDEMSKLSV IALKQHKDLN SVKSDVFDSE  240
ILVQSSILDQ GDSSYAFEPD QSDLSQDEEE NLSKNLVVHD HYPMTSSNLS CFGYPVEDQG  300
FGFWSF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019227837.10.0PREDICTED: homeobox-leucine zipper protein HAT5-like isoform X1
TrEMBLA0A314KNV70.0A0A314KNV7_NICAT; Homeobox-leucine zipper protein hat5
STRINGXP_009604802.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8252495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-43homeobox 1