PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05541g02010.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 416aa    MW: 46736.4 Da    PI: 8.7872
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05541g02010.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.83.3e-12279304126
                               --S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                               y   +C+++ +tG+C yGd+CkF+H+
  Niben101Scf05541g02010.1 279 YQPDICKDYKETGYCGYGDSCKFMHD 304
                               66789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.75E-9277309IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7278305IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878278306IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-10279304IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-12279309IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.109.8E-14339397IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578504.89E-13355398No hitNo description
PfamPF139206.8E-9355396No hitNo description
SMARTSM001849.8E-5356393IPR001841Zinc finger, RING-type
PROSITE profilePS5008910.498356394IPR001841Zinc finger, RING-type
CDDcd001621.95E-8356397No hitNo description
PROSITE patternPS005180371380IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
IGFTTVNEGG WLRPLSRRSY IWTLNKRNAP CFRSPSASSP PPIHFRASRH RRSAARRTSI  60
LRPLTAIPSA ISVTMENPNT PAFQSNPAEA ETEQPPTAPP SSSSVCNFFN KPSKAKNIRK  120
RPTVEEGENE DALGESSVIY TKKKPAIADN KLRFSTGGSK CNKATESNVH SKAPIFHFES  180
SKEIQVQTDS RATATLETET EFSKDARAIR ERALKQAEEA LKGKSKTGGD EKLYKGMNQY  240
TDYKAGLRRE HTISSEKAGG AHGPLRASAH IRVSARFDYQ PDICKDYKET GYCGYGDSCK  300
FMHDRGDYKS GWQIEREWDE AEKERKQKLS MGMLDEDDED AEKSDEDDDD ALPFACFICR  360
DPFVDPVVTK CKHYFCEHCA LKHHAKNKKC FVCNQPTLGI FNTAFEIRKR MAAQGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M5e-6710541114317RING finger protein 113A
5z58_M5e-6710541114317RING finger protein 113A
6ff4_t5e-6710541114317RING finger protein 113A
6ff7_t5e-6710541114317RING finger protein 113A
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019233105.10.0PREDICTED: zinc finger CCCH domain-containing protein 1-like
SwissprotQ8GX841e-154C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A1J6KDY70.0A0A1J6KDY7_NICAT; Zinc finger ccch domain-containing protein 1
STRINGXP_009609000.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44032337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-154C3H family protein