PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05371g00004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 410aa    MW: 46454.4 Da    PI: 5.8324
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05371g00004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.26.2e-13237284254
                               HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                       HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                ++h e+Er+RR+++N++f  Lr+++P+      ++++Ka+ L  Av YI++L
  Niben101Scf05371g00004.1 237 QMNHVEAERQRREKLNHRFYMLRSVVPQV-----TRMDKASLLSDAVAYINEL 284
                               689*************************8.....7***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.6E-112368IPR025610Transcription factor MYC/MYB N-terminal
PfamPF142152.9E-2670160IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000831.89E-15234289No hitNo description
SuperFamilySSF474592.36E-17235298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.06235284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-16235289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-10237284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.9E-16241290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MDELILPSSF SASISQENQP STLQQRLQYI LKSQTNSWAY AIFWQTTSNK DNNGSFFLTW  60
GDGHFQGSNK DVEWFYVLSL AKSYSGSEGV IGKAFTTGTF VWLNGAQLLQ FCSCERAKEA  120
QYNGVKTLVY VPISNGVLEL GSSDIIKEEW TLVQQVKSLF CSVQENGLMN FPDQNTIYFA  180
NFDFVTGMQK DVQESDNSSS KKVATTSHAS FLDSELSNSD FQLLEHPMQK SRVGSKQMNH  240
VEAERQRREK LNHRFYMLRS VVPQVTRMDK ASLLSDAVAY INELKAKVEK LESKLHRNME  300
LKKKPEMEHN DAVDNQSSTN PVDHTLKVEV KMIGPDAMIR VQSEDVNYPS TRLMSAFQDL  360
ELHVYHANIS SVNNIVVQDI MIRDVPNKGL KTEDGLKAAI LRSLEQIEDC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-23221608192Transcription factor MYC3
4rqw_B1e-23221608192Transcription factor MYC3
4rs9_A1e-23221608192Transcription factor MYC3
4yz6_A1e-23221608192Transcription factor MYC3
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009775258.10.0PREDICTED: transcription factor MYC2-like
TrEMBLA0A1U7W9E60.0A0A1U7W9E6_NICSY; transcription factor MYC2-like
STRINGXP_009775258.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.15e-71bHLH family protein