PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05368g01010.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 556aa    MW: 62052.6 Da    PI: 7.6446
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05368g01010.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.9e-1665111148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               +g WT+eEd+ l +av+ + g++Wk+Ia+ ++  R++ qc +rwqk+l
  Niben101Scf05368g01010.1  65 KGGWTPEEDDTLRRAVAVYRGKCWKKIAEFFP-DRSEVQCLHRWQKVL 111
                               688*****************************.************986 PP
2Myb_DNA-binding612.6e-19117163148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               +g+WT+eEd++++++v+++G+  W+ Ia+ ++ gR +kqc++rw+++l
  Niben101Scf05368g01010.1 117 KGPWTQEEDDKIIELVARYGPTKWSVIAKSLP-GRIGKQCRERWHNHL 163
                               79******************************.*************97 PP
3Myb_DNA-binding55.71.1e-17169212146
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               +++WT eE++ l+da++ +G++ W+ Ia+ ++ gRt++ +k++w++
  Niben101Scf05368g01010.1 169 KDAWTLEEELALLDAHRIYGNK-WAEIAKVLP-GRTDNAIKNHWNS 212
                               679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.38160111IPR017930Myb domain
SuperFamilySSF466892.8E-1561118IPR009057Homeodomain-like
SMARTSM007174.1E-1564113IPR001005SANT/Myb domain
PfamPF002491.9E-1565111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-2267119IPR009057Homeodomain-like
CDDcd001673.54E-1368111No hitNo description
PROSITE profilePS5129432.074112167IPR017930Myb domain
SuperFamilySSF466891.27E-31114210IPR009057Homeodomain-like
SMARTSM007174.1E-18116165IPR001005SANT/Myb domain
PfamPF002498.9E-19117163IPR001005SANT/Myb domain
CDDcd001671.35E-15119163No hitNo description
Gene3DG3DSA:1.10.10.601.2E-27120166IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.2E-23167218IPR009057Homeodomain-like
PROSITE profilePS5129422.569168218IPR017930Myb domain
SMARTSM007174.7E-17168216IPR001005SANT/Myb domain
PfamPF002491.9E-15169212IPR001005SANT/Myb domain
CDDcd001676.61E-13171211No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MSLNISMDEL NIEDCCTENK QSTAASTSSV SEYSGSVTVK SLEVCSPTPT SPAHRRTTGP  60
IRRAKGGWTP EEDDTLRRAV AVYRGKCWKK IAEFFPDRSE VQCLHRWQKV LNPDLVKGPW  120
TQEEDDKIIE LVARYGPTKW SVIAKSLPGR IGKQCRERWH NHLNPNIKKD AWTLEEELAL  180
LDAHRIYGNK WAEIAKVLPG RTDNAIKNHW NSSMKKKLDF YLATGNLPSA GRDGLQNGCE  240
DTTASAEKAL VCSHKGSDST ELASSGTTDV CKIENCDKNH QVAKLLVANI DASISGPKNE  300
SADSEVIRWE AESPVMDSIH VKQIKDIKFE GYGKNSEVDQ FKVIETPFSC EIPTYGTLYY  360
EPPQLESCIS MDSDHLNIRW AHFGSDSSPS LSPRSFLTPP SSLKGSSLYS QTPESILKTA  420
ARSFPNTPSI FRKRKLNYTP GNKIGNADGD MHKDEVHDAC EDKQTDSSEK YVMIRGSYLK  480
NPSYNGIGPC DTQAFNASPP YRIRSKRKSI FRSVEKQLKF AFDNEQHNTS TGTNDSTVKE  540
ISHVADCLRA TRMGIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C8e-69642185159MYB PROTO-ONCOGENE PROTEIN
1h89_C8e-69642185159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00482DAPTransfer from AT5G02320Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009787902.10.0PREDICTED: uncharacterized protein LOC104235784 isoform X1
SwissprotQ6R0321e-147MB3R5_ARATH; Transcription factor MYB3R-5
TrEMBLA0A1U7X7260.0A0A1U7X726_NICSY; uncharacterized protein LOC104235784 isoform X1
STRINGXP_009787902.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54612437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-131myb domain protein 3r-5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  3. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]