PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf05357g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Trihelix | ||||||||
Protein Properties | Length: 259aa MW: 29564.1 Da PI: 10.0305 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 49.8 | 8.9e-16 | 19 | 102 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergf..erspkqCkekwenlnkrykkikegekkrtsessstcpy 81 +W++ + +Liea ++ rl+rg+l++++W+ev++++ r+ g+ +r+ +qCk++++ l+k+yk +k+ ++ s++p+ Niben101Scf05357g00006.1 19 CWSEGATETLIEAWGDRYVRLNRGNLRQKDWKEVADNVnsRQNGVkpQRTDVQCKNRIDTLKKKYKLEKTKSSP------SKWPF 97 7*************************************98777776689******************9998886......58*** PP trihelix 82 fdqle 86 +++l+ Niben101Scf05357g00006.1 98 YNRLD 102 **997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.9E-27 | 17 | 102 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.3E-4 | 45 | 85 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MESQTAAPTR PHAGGREDCW SEGATETLIE AWGDRYVRLN RGNLRQKDWK EVADNVNSRQ 60 NGVKPQRTDV QCKNRIDTLK KKYKLEKTKS SPSKWPFYNR LDYLIGTNNV STSPCNRKLT 120 AAITLTVKSN SNPNFGAMNY SGSSSRMNSS GSNYSSHDDL PFGSGGRKNK MEYVGLAEET 180 TAYKELARAI LRFGEIYERI ESTKQQQMVE LEKQRMEFTK DLEVQRMNIF METQLQIERA 240 KRPARHPAST VNRSSGFQD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009786679.1 | 1e-160 | PREDICTED: uncharacterized protein LOC104234753 | ||||
Swissprot | Q9LJG8 | 8e-34 | ASIL2_ARATH; Trihelix transcription factor ASIL2 | ||||
TrEMBL | A0A1U7XIA3 | 1e-158 | A0A1U7XIA3_NICSY; uncharacterized protein LOC104234753 | ||||
STRING | XP_009786679.1 | 1e-159 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13707 | 12 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05550.2 | 4e-64 | sequence-specific DNA binding transcription factors |