PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf05323g02008.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C3H

Protein Properties

Length: 780aa MW: 87018.1 Da PI: 4.5537

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf05323g02008.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.7	3.1e-06	252	271	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C ff+r G+C G++C+F H Niben101Scf05323g02008.1 252 RCEFFSR-GWCIKGNSCRFLH 271 5****.*********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.291	247	274	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.83E-5	248	271	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010220	Biological Process	positive regulation of vernalization response
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 780 aa Download sequence Send to blast
MPSPVAAVDP KADVELDEDD EEYEETEVEE EIEVEEEEEE EEEEEEEEEV EEEIEVEEEE 60 EEEIEVEEEV EEEEEEEGKG EEEKNEEKGQ ASVPLNVDDQ KDGSQVLEPS GLEQHLRSGF 120 STQQEPVANL PPHIPWIEDG NDSCRISNSD EARERKGGER THIESDVQAS GFEDGETNRK 180 RIQPFGQAVD AEILTDVSGK VAIDVQFTEG GDQEAVDDLK QTSPRLEVLK TRERSSSPAA 240 DSRGGSKRLA MRCEFFSRGW CIKGNSCRFL HIKDHVTSHD KDVILDEAMI KSKLANGKGL 300 QENGKRSVLD GSSDSVPSAV QSGENIQLRS DEESHMLMDG PSSIPEVRRE SLGCKPYLAG 360 YSTSSSPLLK DGSVHKNILH GGKRSSVLLS DSYQNTVVSS YASGLNNVNY KRSRSVHDNH 420 GFQVLNDSAD RLSHRCSSSR NVDALDDQKL LDSSQEYSSS KSTSLQQKSS AFPSSEAELS 480 RIDLSRDTRR SSDYKTKVSS DNWEPSVPFR PSSFLSQIIG CPESLYDPLR DSIEQRNVGD 540 GPSKFSSSGK GGPVFTKCTQ ENDDPVSPGT LGPEQSSNKH PISGHVYHRD ILPDNLSEKE 600 LSNNEADTAD TAVAHQEHIN TSSKADKLNL STELQHTRLR KKTKSEFERL GHGNEIDIDW 660 KTDRSVNKES RILKHFHAAL VEFIKELLKP TWSEGLMSKD AYKIIVKKTV DKVVNSLHPH 720 QVPGTAESIR QYLSVSQPKL AKLIECQKGT RRNIAGKNEK GYKERQKREG ERGMPGEIDK

Sequence ? help Back to Top

Protein Sequence Length: 780 aa Download sequence Send to blast

MPSPVAAVDP KADVELDEDD EEYEETEVEE EIEVEEEEEE EEEEEEEEEV EEEIEVEEEE  60
EEEIEVEEEV EEEEEEEGKG EEEKNEEKGQ ASVPLNVDDQ KDGSQVLEPS GLEQHLRSGF  120
STQQEPVANL PPHIPWIEDG NDSCRISNSD EARERKGGER THIESDVQAS GFEDGETNRK  180
RIQPFGQAVD AEILTDVSGK VAIDVQFTEG GDQEAVDDLK QTSPRLEVLK TRERSSSPAA  240
DSRGGSKRLA MRCEFFSRGW CIKGNSCRFL HIKDHVTSHD KDVILDEAMI KSKLANGKGL  300
QENGKRSVLD GSSDSVPSAV QSGENIQLRS DEESHMLMDG PSSIPEVRRE SLGCKPYLAG  360
YSTSSSPLLK DGSVHKNILH GGKRSSVLLS DSYQNTVVSS YASGLNNVNY KRSRSVHDNH  420
GFQVLNDSAD RLSHRCSSSR NVDALDDQKL LDSSQEYSSS KSTSLQQKSS AFPSSEAELS  480
RIDLSRDTRR SSDYKTKVSS DNWEPSVPFR PSSFLSQIIG CPESLYDPLR DSIEQRNVGD  540
GPSKFSSSGK GGPVFTKCTQ ENDDPVSPGT LGPEQSSNKH PISGHVYHRD ILPDNLSEKE  600
LSNNEADTAD TAVAHQEHIN TSSKADKLNL STELQHTRLR KKTKSEFERL GHGNEIDIDW  660
KTDRSVNKES RILKHFHAAL VEFIKELLKP TWSEGLMSKD AYKIIVKKTV DKVVNSLHPH  720
QVPGTAESIR QYLSVSQPKL AKLIECQKGT RRNIAGKNEK GYKERQKREG ERGMPGEIDK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009767961.1	0.0	PREDICTED: protein FRIGIDA-ESSENTIAL 1-like, partial
TrEMBL	A0A1U7VSM9	0.0	A0A1U7VSM9_NICSY; protein FRIGIDA-ESSENTIAL 1-like
STRING	XP_009767961.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3004	21	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	5e-19	C3H family protein