PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf05201g11005.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SRS

Protein Properties

Length: 475aa MW: 50099 Da PI: 9.2218

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf05201g11005.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	217.8	2.5e-67	262	426	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaaskrkrelkskkqs 84 +++CqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpaa+rrerq a+++ + a+ +++++k++r +s++++ Niben101Scf05201g11005.1 262 VSSTCQDCGNQAKKDCPHRRCRTCCKSRGFDCTTHVKSTWVPAARRRERQLIGGASTNVNVAAGsssqSTSSAKKPRLVNSQATT 346 6789*******************************************98766665544332234447788899999999 PP DUF702 85 alsstklssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++s+t++s+++++++++tss lP +v+++avf+cvrv+svddg++e+aYq++v igGhvfkG+LydqG+ee Niben101Scf05201g11005.1 347 TASHTSTSNTTPPRSFDTSSshqdasfkasLPGQVRAPAVFKCVRVTSVDDGDDEFAYQAVVRIGGHVFKGFLYDQGIEE 426 **************999******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.1E-62	264	425	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.3E-26	265	307	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.1E-28	377	424	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0048364	Biological Process	root development
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence Send to blast
MYAIDVAAPV ADATKNGGVG GVRRERQVIL RFSKILQHQQ LASLAIVKDK KYSSRRRNLL 60 KSAAVATARR LLQASDSGAF ADWVANSSNS AIGDLSLGFN AGTTIGSGGG NGPHTAGSGS 120 GSGGGHSGMW SASSSRQMQI NYGLSPEMGM FVVHPASFHH HHHHQHSHQE NTINFDPING 180 SNISTTNTSL GVGVIPLLTA TPLTNMVSFD DQDLVTRNRG NDNEGSGFQF FSNQQPQNST 240 NYTKSSNILG SGNGNNNIGG SVSSTCQDCG NQAKKDCPHR RCRTCCKSRG FDCTTHVKST 300 WVPAARRRER QLIGGASTNV NVAAGSSSQS TSSAKKPRLV NSQATTTASH TSTSNTTPPR 360 SFDTSSSHQD ASFKASLPGQ VRAPAVFKCV RVTSVDDGDD EFAYQAVVRI GGHVFKGFLY 420 DQGIEEGKDN NNYPNLSDLH LGGSGNITNE TSDLYAASTG GGGLLGGSNY VNQIN

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence Send to blast

MYAIDVAAPV ADATKNGGVG GVRRERQVIL RFSKILQHQQ LASLAIVKDK KYSSRRRNLL  60
KSAAVATARR LLQASDSGAF ADWVANSSNS AIGDLSLGFN AGTTIGSGGG NGPHTAGSGS  120
GSGGGHSGMW SASSSRQMQI NYGLSPEMGM FVVHPASFHH HHHHQHSHQE NTINFDPING  180
SNISTTNTSL GVGVIPLLTA TPLTNMVSFD DQDLVTRNRG NDNEGSGFQF FSNQQPQNST  240
NYTKSSNILG SGNGNNNIGG SVSSTCQDCG NQAKKDCPHR RCRTCCKSRG FDCTTHVKST  300
WVPAARRRER QLIGGASTNV NVAAGSSSQS TSSAKKPRLV NSQATTTASH TSTSNTTPPR  360
SFDTSSSHQD ASFKASLPGQ VRAPAVFKCV RVTSVDDGDD EFAYQAVVRI GGHVFKGFLY  420
DQGIEEGKDN NNYPNLSDLH LGGSGNITNE TSDLYAASTG GGGLLGGSNY VNQIN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009796421.1	0.0	PREDICTED: protein LATERAL ROOT PRIMORDIUM 1
Refseq	XP_016458851.1	0.0	PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like
Swissprot	Q94CK9	6e-78	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A1S3Z339	0.0	A0A1S3Z339_TOBAC; protein LATERAL ROOT PRIMORDIUM 1-like
TrEMBL	A0A1U7Y389	0.0	A0A1U7Y389_NICSY; protein LATERAL ROOT PRIMORDIUM 1
STRING	XP_009604000.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7655	23	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.4	4e-75	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]