PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05173g09004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 238aa    MW: 26915.7 Da    PI: 6.26
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05173g09004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.91.4e-14112165155
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               ++y GV +++ +g + Ae rdps  g   +r +lg++ tae+Aa a+++a+ k++g
  Niben101Scf05173g09004.1 112 TRYIGVKRRP-WGTFSAETRDPSRKG-EgARLWLGTYETAEDAALAYDQAAFKIRG 165
                               589****9*9.**********85533.35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.5E-10112165IPR001471AP2/ERF domain
CDDcd000181.74E-25112175No hitNo description
SuperFamilySSF541714.84E-18113174IPR016177DNA-binding domain
PROSITE profilePS5103221.535113173IPR001471AP2/ERF domain
SMARTSM003808.5E-27113179IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-26113174IPR001471AP2/ERF domain
PRINTSPR003679.2E-8114125IPR001471AP2/ERF domain
PRINTSPR003679.2E-8139155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MEMNPADETI FFSESHPLLE SIKQHLLDDS DFSEIFSPMS SSNEILPNSP GSSFSSFDFD  60
CSFLNWDENF EETSIPTDQN PSHESHEKYS ETEEKTQAPA VARERNAPRD WTRYIGVKRR  120
PWGTFSAETR DPSRKGEGAR LWLGTYETAE DAALAYDQAA FKIRGSRARL NFPHLIGVNM  180
PKPARVTARR SRTRSPEPSS SSSTSSSENV PRKRNIDVIN SIATAKFLRH SLNLQRLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-24114173663ATERF1
3gcc_A5e-24114173663ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019263102.11e-145PREDICTED: ethylene-responsive transcription factor 1-like
TrEMBLA0A1J6JM521e-143A0A1J6JM52_NICAT; Ethylene-responsive transcription factor 13
STRINGXP_009794568.11e-137(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.11e-21ethylene-responsive element binding factor 13