PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05151g02005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 289aa    MW: 33047.7 Da    PI: 9.622
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05151g02005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.81.9e-32215273159
                               ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               ldDgy+WrKYGqK+vk+s +prsYYrCt+++C+vkk+ver +ed ++v++tYeg+Hnh+
  Niben101Scf05151g02005.1 215 LDDGYKWRKYGQKVVKNSLHPRSYYRCTHSNCRVKKRVERLSEDCRMVITTYEGRHNHS 273
                               59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.1E-34200273IPR003657WRKY domain
SuperFamilySSF1182905.36E-29207274IPR003657WRKY domain
PROSITE profilePS5081129.884210275IPR003657WRKY domain
SMARTSM007746.5E-38215274IPR003657WRKY domain
PfamPF031064.0E-25216272IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MLEKEITPIF FSKPPHGVRI HAIDQNTSIR RRRSSSNNRR NCSKHQEIKR LKTIMERGEG  60
RELNNYELQV SFSATHDLGF VHFADHNQMM SFLAPPSSHS QLSSQIPQPL QAAAATTVTP  120
PTTTTNTTVA SASNNISSAL GFNHNEFVNR PSWNNDQVET LDPKVVNDEN CSGNASEGNN  180
SWWKSSSSDK GKVKIRRKLR EPRFCFQTRS DIDVLDDGYK WRKYGQKVVK NSLHPRSYYR  240
CTHSNCRVKK RVERLSEDCR MVITTYEGRH NHSPSDDSNS SEHDCFTSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-24207272974Probable WRKY transcription factor 4
2lex_A2e-24207272974Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13051RRRSSSNNRRNCSKHQEIKRLK
2193199KIRRKLR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00618PBMTransfer from AT2G44745Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009797802.11e-146PREDICTED: probable WRKY transcription factor 12
RefseqXP_016492612.11e-146PREDICTED: probable WRKY transcription factor 12
SwissprotQ93WY43e-71WRK12_ARATH; Probable WRKY transcription factor 12
TrEMBLA0A1S4BUS01e-145A0A1S4BUS0_TOBAC; probable WRKY transcription factor 12
TrEMBLA0A1U7Y0S21e-145A0A1U7Y0S2_NICSY; probable WRKY transcription factor 12
STRINGXP_009797802.11e-145(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA73362029
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44745.16e-53WRKY family protein
Publications ? help Back to Top
  1. Yu Y, et al.
    MlWRKY12, a novel Miscanthus transcription factor, participates in pith secondary cell wall formation and promotes flowering.
    Plant Sci., 2013. 212: p. 1-9
    [PMID:24094048]
  2. Yang L, et al.
    PtrWRKY19, a novel WRKY transcription factor, contributes to the regulation of pith secondary wall formation in Populus trichocarpa.
    Sci Rep, 2016. 6: p. 18643
    [PMID:26819184]
  3. Li W,Wang H,Yu D
    Arabidopsis WRKY Transcription Factors WRKY12 and WRKY13 Oppositely Regulate Flowering under Short-Day Conditions.
    Mol Plant, 2016. 9(11): p. 1492-1503
    [PMID:27592586]
  4. Han Y, et al.
    WRKY12 represses GSH1 expression to negatively regulate cadmium tolerance in Arabidopsis.
    Plant Mol. Biol., 2019. 99(1-2): p. 149-159
    [PMID:30617455]