PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05140g01007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 385aa    MW: 43348.6 Da    PI: 8.9585
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05140g01007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.97.1e-20282330355
                       AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               y+GVr+++ +g+W+AeIrdp+    + +r++lg+f taeeAa+a+++a+ +++g
  Niben101Scf05140g01007.1 282 YRGVRQRP-WGKWAAEIRDPR----KaARVWLGTFLTAEEAARAYDRAAIEFRG 330
                               9*******.**********94....36************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.9E-14281330IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-31281338IPR001471AP2/ERF domain
SuperFamilySSF541715.49E-22281339IPR016177DNA-binding domain
SMARTSM003805.5E-38281344IPR001471AP2/ERF domain
PROSITE profilePS5103224.684281338IPR001471AP2/ERF domain
CDDcd000186.16E-34281337No hitNo description
PRINTSPR003672.6E-11282293IPR001471AP2/ERF domain
PRINTSPR003672.6E-11304320IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MQWSTNIRAK QESSYDNHRH HLPPPRLTAE QEFSVMVAAL KNVITGNATP IHANSELNSF  60
ECFQNVISTP SFSSSPSTSM SSFEPPLLRV IDEPEPCNFC RIKGCLGCDY FGATITTDNN  120
NINNNKTKKI SVVKQKKKNN YRGWSTNIRA KQESSYDNHR HHLPPPRLTA EQEFSVMVAA  180
LKNVITGNAT PIHANSELNS FECFQNVIST PSFSSSPSTS MSSFEPPLLR VIDEPEPCNF  240
CRIKGCLGCD YFGATITTDN NNINNNKTKK ISVVKQKKKN NYRGVRQRPW GKWAAEIRDP  300
RKAARVWLGT FLTAEEAARA YDRAAIEFRG PRAKLNFSFS DYTLIQEQST PSSSPQNQQP  360
ESKFEQGNAD VKMGMSKLDS DFWDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-23278337262ATERF1
3gcc_A4e-23278337262ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016485767.11e-139PREDICTED: ethylene-responsive transcription factor ERF109-like
TrEMBLA0A1S4BA871e-137A0A1S4BA87_TOBAC; ethylene-responsive transcription factor ERF109-like
STRINGXP_009784619.11e-137(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.16e-28redox responsive transcription factor 1