PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf05115g03006.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 525aa MW: 57470.7 Da PI: 7.1865

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf05115g03006.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.5	2.1e-07	164	194	4	38
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-S CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKl 38 +h+ +Er RR++iN ++ L+el+P + +kKl Niben101Scf05115g03006.1 164 SHSLAERARREKINARMKLLQELVPGC----NKKL 194 8************************98....6665 PP
2	HLH	28.5	2.8e-09	368	415	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + +k a++L + +++++sLq Niben101Scf05115g03006.1 368 SHSLAERARREKINARMKLLQELVPGC----NKISGTAMVLDEIINHVQSLQ 415 8***********************9....89999*************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	8.58E-5	158	195	No hit	No description
SuperFamily	SSF47459	3.01E-8	158	195	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.715	160	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-8	163	192	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.0E-5	164	194	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.79	166	200	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.07E-15	362	432	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.64E-8	362	419	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.9E-15	364	429	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.634	364	414	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.5E-7	368	415	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.2E-9	370	420	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 525 aa Download sequence Send to blast
MGEMGTASSF TALLELPANQ AVELLVHSLE TDKTGEPHIP HYRYPPPPHP PPHPPPPPLP 60 IFPSDAALID RASKFSVFAA TAAGISPESN STLSNSCSKS LLVKQEPLES EFNQNSSPVT 120 VSSPTVKETS SKKGKKSTNN TSEDDAEKLP YVHVRARRGQ ATDSHSLAER ARREKINARM 180 KLLQELVPGC NKKLELRSES CGAKMGEMGT ASSFTALLEL PANQAVELLV HSLETDKTGE 240 PHIPHYRYPP PPHPPPHPPP PPLPIFPSDA ALIDRASKFS VFAATAAGIS PESNSTLSNS 300 CSKSLLVKQE PLESEFNQNS SPVTVSSPTV KETSSKKGKK STNNTSEDDA EKLPYVHVRA 360 RRGQATDSHS LAERARREKI NARMKLLQEL VPGCNKISGT AMVLDEIINH VQSLQRQVEF 420 LSMRLAAVNP SVDFNLDNLF APERSGSRVE RNLPDMIVPP IWAEGQTSGK RNQYQHLWHL 480 EGFHQPVWGR VEDNSSFITP ENSLLTYDSS ANSASLHPNQ LKMEL

Sequence ? help Back to Top

Protein Sequence Length: 525 aa Download sequence Send to blast

MGEMGTASSF TALLELPANQ AVELLVHSLE TDKTGEPHIP HYRYPPPPHP PPHPPPPPLP  60
IFPSDAALID RASKFSVFAA TAAGISPESN STLSNSCSKS LLVKQEPLES EFNQNSSPVT  120
VSSPTVKETS SKKGKKSTNN TSEDDAEKLP YVHVRARRGQ ATDSHSLAER ARREKINARM  180
KLLQELVPGC NKKLELRSES CGAKMGEMGT ASSFTALLEL PANQAVELLV HSLETDKTGE  240
PHIPHYRYPP PPHPPPHPPP PPLPIFPSDA ALIDRASKFS VFAATAAGIS PESNSTLSNS  300
CSKSLLVKQE PLESEFNQNS SPVTVSSPTV KETSSKKGKK STNNTSEDDA EKLPYVHVRA  360
RRGQATDSHS LAERARREKI NARMKLLQEL VPGCNKISGT AMVLDEIINH VQSLQRQVEF  420
LSMRLAAVNP SVDFNLDNLF APERSGSRVE RNLPDMIVPP IWAEGQTSGK RNQYQHLWHL  480
EGFHQPVWGR VEDNSSFITP ENSLLTYDSS ANSASLHPNQ LKMEL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016468020.1	0.0	PREDICTED: transcription factor bHLH48-like isoform X1
TrEMBL	A0A1S3ZUC4	0.0	A0A1S3ZUC4_TOBAC; transcription factor bHLH48-like isoform X1
STRING	XP_009795428.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4029	23	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42300.1	1e-66	bHLH family protein