PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05115g01002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 702aa    MW: 76910 Da    PI: 6.7219
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05115g01002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.63.9e-07280300526
                               --SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                               +C+ f++ G C++Gd C +aHg
  Niben101Scf05115g01002.1 280 PCPEFRK-GACRRGDMCEYAHG 300
                               8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484033.73E-2010149IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.205.2E-2112161IPR020683Ankyrin repeat-containing domain
PfamPF127962.7E-1154128IPR020683Ankyrin repeat-containing domain
CDDcd002046.73E-1856148No hitNo description
PROSITE profilePS5029719.46559162IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00315989IPR002110Ankyrin repeat
PRINTSPR014153.4E-56075IPR002110Ankyrin repeat
SMARTSM002483.0E-494126IPR002110Ankyrin repeat
PROSITE profilePS5008812.52994129IPR002110Ankyrin repeat
PRINTSPR014153.4E-5113127IPR002110Ankyrin repeat
SMARTSM002482300130165IPR002110Ankyrin repeat
SMARTSM003569.5E-6275301IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.981280302IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-4280300IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4308338IPR000571Zinc finger, CCCH-type
SMARTSM0035637310333IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    Send to blast
MNINHLTVET EDTFAGLLEF AANNDIEAFK SWIERDISGI HEVGLWYGRQ KGSKQMDLEH  60
RTPLMVAAMY GSVDVLKLIL SLPGVDVNHS CGRDNSTALH CAASGGSLNA VDAVKLLVEA  120
GADPNMKNTN GHRPLDVIVI SPKFHTMKSC LENLLKTDAT EDCNLRVSMA TSSSNSPPLS  180
PSPGNRSPSS ASDTTSSPRS AKSSDLPVPF TSEKKEYPID PSMPDIKNSI YSTDEFRMFS  240
FKIKLCSRAY SHDWTECPFV HPGENARRRD PRKYHYSCVP CPEFRKGACR RGDMCEYAHG  300
VFECWLHPAQ YRTRLCKDGT NCDRRVCFFA HTQEELRPLY VSAGSAVPSP RSNTSAANAL  360
DFAAAMGLIP GSPSSVSGMS PSPFTPPMSP SANGISNIGW PQQNVPALHL PGSNLQSSRL  420
RSSLNARDIP ADDLTMLSDF DVQQKQLLYE LSCLSHSSTN ANSFSHSVRP RTLTPSNLED  480
SFSAESSSPR YSDHSLPQAV FSPTHKSIGF NQFQQQQAMA LSPINTRFSP KTVESPLLQG  540
SFGVPPMRNM SPRGMEPISP MSSRTSILSQ SDKKQQFRSL SSRDLGSSAS AIVGSPADSW  600
SNWGTAMGKP DWAFNTEEFG RLRRSSSFEH ANNGEEPDLS WVQSLVKESP QEVKDESASR  660
VSGLTNAGAD IRETSTSSSQ IGQFDQLGAW MEQMKLDQLI PQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009781965.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A1U7X6680.0A0A1U7X668_NICSY; zinc finger CCCH domain-containing protein 30-like
STRINGXP_009781965.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8832488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]