PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf05089g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 345aa MW: 36879 Da PI: 6.4483 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.9 | 1.3e-09 | 119 | 155 | 3 | 39 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkq 39 +WT+eE+ l++ + ++lG+g+W+ I+r + + Rt+ q Niben101Scf05089g00006.1 119 PWTEEEHRLFLLGLQKLGKGDWRGISRNFVTSRTPTQ 155 8****************************99999865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.60.10 | 4.2E-4 | 2 | 23 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS50158 | 8.515 | 3 | 19 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS50090 | 6.76 | 112 | 155 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 1.64E-8 | 114 | 155 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.4E-9 | 115 | 155 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 3.7E-10 | 116 | 155 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.7E-7 | 119 | 155 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.43E-7 | 119 | 155 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MTRRCSHCNN NGHNSRTCPT TRGGTPTGGV GSSSGGGGGG SGGVRLFGVR LTDGSIMKKS 60 ASMGNLSSLH SYHSSSSPNP PGSPSSDVPH LPDGYLSDDP NTHASISANR RLERKKGVPW 120 TEEEHRLFLL GLQKLGKGDW RGISRNFVTS RTPTQGTDAS HPLSEEQFML PPRAIESDKE 180 HLAPSATKAI ESDFADTLPS LDLSLKSDFE SMETTASEPV EETKLNTTTD EIPSVYPAFF 240 PAYIPVPYSF WPSNAVPVPE DRGSEPSHHQ ILKPIPTVPK EPVNVDELVG MSQLTLADAG 300 SGHIEPSPLS LKLTAEPSRQ SAFHASTPVK NREITKGETA PIQAV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019245472.1 | 0.0 | PREDICTED: transcription factor MYB1R1 | ||||
TrEMBL | A0A1J6IRS6 | 0.0 | A0A1J6IRS6_NICAT; Transcription factor myb1r1 | ||||
STRING | XP_009772765.1 | 0.0 | (Nicotiana sylvestris) | ||||
STRING | XP_009626737.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11770 | 19 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16350.1 | 7e-63 | MYB_related family protein |