PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05073g02002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 392aa    MW: 44683 Da    PI: 4.9304
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05073g02002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.61.1e-13222268354
                               HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                       HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                +h e+Er+RR+++N++f eLr+++P+      ++++Ka+ L  Av YI++L
  Niben101Scf05073g02002.1 222 INHVEAERQRREKLNHRFYELRSVVPQV-----TRMDKASLLSDAVAYINEL 268
                               589************************8.....7***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.9E-102166IPR025610Transcription factor MYC/MYB N-terminal
PfamPF142151.1E-2668158IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.218219268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-18219286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.51E-15219272No hitNo description
Gene3DG3DSA:4.10.280.101.7E-16220273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-11223268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-16225274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MDELIFPSSA SISQENQPSI LEQRLQYILK SQTNSWAYAI FWQTASNNDN NGSFLLTWGD  60
GHFQGSNKDV EWFYVLSLAK SYSSNEGVIG KAFTTGTFVW LNGAEQLQFC SCERAKEAQY  120
NGVKTLVYVP ISSGVLELGS SDIIKEDWTL VQQVESLFSS VQENGAMNFL DQNSTIYFTN  180
FDVVTGMQKD VQESDNNSSE KIRRTYRRRG RKQGEDCDNK QINHVEAERQ RREKLNHRFY  240
ELRSVVPQVT RMDKASLLSD AVAYINELKA KVDELESKLH RIQEINKKPQ MEHNDDVDNQ  300
SSTNSVDHEL KVEVKMIGAD AMIRVQSEDV NYPSTRLMCA LQDLELHVYH ANISSVNNIV  360
LQDIVIRAPK ELKTEDGLRA AILRSLEQIE AC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A4e-22211589192Transcription factor MYC3
4rqw_B4e-22211589192Transcription factor MYC3
4rs9_A4e-22211589192Transcription factor MYC3
4yz6_A4e-22211589192Transcription factor MYC3
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019252134.10.0PREDICTED: transcription factor MYC2-like
TrEMBLA0A1J6IW890.0A0A1J6IW89_NICAT; Transcription factor bhlh14
STRINGXP_009775258.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.14e-76bHLH family protein