PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05060g02002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 305aa    MW: 34429.6 Da    PI: 6.2941
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05060g02002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.85e-181461148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+WT+eEd  lv +v+++G+g+W++++   g++R+ k+c++rw +yl
  Niben101Scf05060g02002.1 14 KGPWTPEEDIMLVSYVQEHGPGNWRAVPTNTGLRRCSKSCRLRWTNYL 61
                              79********************************************97 PP
2Myb_DNA-binding48.71.7e-1567112148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               rg++T +E++ ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  Niben101Scf05060g02002.1  67 RGSFTDQEEKMIIQLQALLGNK-WAAIASYLP-ERTDNDIKNYWNTHL 112
                               89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.822965IPR017930Myb domain
SuperFamilySSF466895.14E-3111108IPR009057Homeodomain-like
SMARTSM007176.6E-151363IPR001005SANT/Myb domain
PfamPF002497.8E-171461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-241568IPR009057Homeodomain-like
CDDcd001673.23E-111661No hitNo description
SMARTSM007178.3E-1666114IPR001005SANT/Myb domain
PROSITE profilePS5129420.28966116IPR017930Myb domain
PfamPF002499.8E-1567112IPR001005SANT/Myb domain
CDDcd001671.58E-1069111No hitNo description
Gene3DG3DSA:1.10.10.603.4E-2569117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MGRPPCCDKI GVKKGPWTPE EDIMLVSYVQ EHGPGNWRAV PTNTGLRRCS KSCRLRWTNY  60
LRPGIKRGSF TDQEEKMIIQ LQALLGNKWA AIASYLPERT DNDIKNYWNT HLKKKLKKLE  120
TSDLYSKDGS CLSPLNSTSR GQWERTLQTD INTAKQALQN ALSLDKSSPI PEYTTTDVKP  180
INLGCYSYIK QEGKVSNSTY ASSAENIAKL LKQWTRSDST NISEQSKASS STQLSCNNNA  240
MTEEFESLSS FESFEQSNSD QFSQSLTPDA GKLHCEISKR EVDDQVPLSV MLESWLFDEN  300
DDLLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-27141164105MYB PROTO-ONCOGENE PROTEIN
1h8a_C4e-271411627128MYB TRANSFORMING PROTEIN
1mse_C4e-27141164105C-Myb DNA-Binding Domain
1msf_C4e-27141164105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009618496.10.0PREDICTED: myb-related protein 306-like
RefseqXP_018631287.10.0PREDICTED: myb-related protein 306-like
SwissprotP813921e-105MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A1S3YHB70.0A0A1S3YHB7_TOBAC; myb-related protein 306-like
STRINGXP_009618496.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.13e-93myb domain protein 94
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]