PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04950g05002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ZF-HD
Protein Properties Length: 241aa    MW: 27362.5 Da    PI: 7.309
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04950g05002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer103.21.7e-3254107357
               ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 
                               k +YkeClkNhA+ +GghavDGCgEf+p+ ge+g+ ++lkCaAC+CHRnFHR+ +
  Niben101Scf04950g05002.1  54 KPKYKECLKNHAVGIGGHAVDGCGEFIPA-GEDGSLDSLKCAACNCHRNFHRKIT 107
                               679*************************9.999*******************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257743.0E-2156108IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047707.0E-2956106IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.5E-3056105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.62957106IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.604.7E-29168239IPR009057Homeodomain-like
SuperFamilySSF466897.43E-18169236IPR009057Homeodomain-like
PROSITE profilePS500718.633176240IPR001356Homeobox domain
TIGRFAMsTIGR015655.9E-25178235IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MDFKNHQEEE ETEPPPSYDD SLNNSNSTHT TKMPSPTPME LEPLVVVHTW HNNKPKYKEC  60
LKNHAVGIGG HAVDGCGEFI PAGEDGSLDS LKCAACNCHR NFHRKITQPP PTSVEPPSFV  120
NYHPPYYRSL PPPCGYLQYH VAPQQRLLAL PSTSGGGGYR EYQEDMSNLN NNGGSGSKKR  180
YRTKFSQEQK EKMQELADKL GWRIQREDEE LVQQLCNETG VRRQVFKVWM HNNKNTLGNK  240
P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-231772361675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009769511.11e-158PREDICTED: zinc-finger homeodomain protein 2-like isoform X2
RefseqXP_016472938.11e-158PREDICTED: zinc-finger homeodomain protein 2-like
SwissprotA2Z2592e-62ZHD1_ORYSI; Zinc-finger homeodomain protein 1
TrEMBLA0A1S4A8H11e-156A0A1S4A8H1_TOBAC; zinc-finger homeodomain protein 2-like
TrEMBLA0A1U7VX161e-156A0A1U7VX16_NICSY; zinc-finger homeodomain protein 2-like isoform X2
STRINGXP_009769508.11e-155(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51824128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.16e-60homeobox protein 22