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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Niben101Scf04881g01002.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family | WRKY | ||||||||
| Protein Properties | Length: 297aa MW: 33260.5 Da PI: 5.0222 | ||||||||
| Description | WRKY family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | WRKY | 33.7 | 7.3e-11 | 196 | 217 | 2 | 23 |
--SS-EEEEEEE--TT-SS-EE CS
WRKY 2 dDgynWrKYGqKevkgsefprs 23
+Dgy+WrKYGqK vk+s++p s
Niben101Scf04881g01002.1 196 EDGYRWRKYGQKAVKNSPYPSS 217
8******************975 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:2.20.25.80 | 1.8E-11 | 181 | 216 | IPR003657 | WRKY domain |
| SuperFamily | SSF118290 | 7.98E-9 | 187 | 216 | IPR003657 | WRKY domain |
| PROSITE profile | PS50811 | 12.748 | 190 | 217 | IPR003657 | WRKY domain |
| SMART | SM00774 | 2.3E-4 | 195 | 226 | IPR003657 | WRKY domain |
| Pfam | PF03106 | 7.1E-7 | 196 | 217 | IPR003657 | WRKY domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 297 aa Download sequence Send to blast |
MADELRDFYY HQPFQEDIRL GYNNLYSQTR VGDSNDSSVV QNIHMLDPSF MSYINTHEYL 60 HGSSSDYANS LGKPFGFSAP STPSDQAFSS IINKDHDVIP VLDAINNNDD VIVGGGSETP 120 VTPNSSISNS SSNEAAADDQ DSNKSADNTK KDKEVKESLE DGEDASKKEN KAKKKEKTQR 180 PPKFAFMTKS EVDHLEDGYR WRKYGQKAVK NSPYPSSPSP LMAAPQAFHQ QLMNMAQMPH 240 QFYGNNAFGI NPPTNSSSVM YNQNVITQHE LHQQLQFSPD YGLLQDMVPS MFLKQEP |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_009760855.1 | 0.0 | PREDICTED: probable WRKY transcription factor 71 | ||||
| Refseq | XP_016490925.1 | 0.0 | PREDICTED: probable WRKY transcription factor 71 | ||||
| TrEMBL | A0A1S4BPX5 | 1e-180 | A0A1S4BPX5_TOBAC; probable WRKY transcription factor 71 | ||||
| TrEMBL | A0A1U7VG83 | 1e-180 | A0A1U7VG83_NICSY; probable WRKY transcription factor 71 | ||||
| STRING | XP_009760855.1 | 1e-180 | (Nicotiana sylvestris) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA1485 | 24 | 75 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G18170.1 | 6e-21 | WRKY DNA-binding protein 28 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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