PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04871g19004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 323aa    MW: 36113.9 Da    PI: 6.9308
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04871g19004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY993e-31164222259
                               --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                               +D ++WrKYGqK++kgs++pr+YY+C+++ gC ++k+ver+++dp++++itY+ eHnh+
  Niben101Scf04871g19004.1 164 SDMWSWRKYGQKPIKGSPYPRGYYKCSTSkGCLARKQVERNRSDPNMFIITYTAEHNHP 222
                               79************************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.3E-31151224IPR003657WRKY domain
PROSITE profilePS5081135.175158224IPR003657WRKY domain
SuperFamilySSF1182901.57E-26161224IPR003657WRKY domain
SMARTSM007749.3E-37163223IPR003657WRKY domain
PfamPF031067.7E-26165222IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MEEDWDLHAV VRSCAAANST TVIATTTSSS GSATISSCNF QPRVDDSNSF CFQDLHFDPR  60
FTTQNTAFEE LHELCKPFFN ESPLQKSPLI SPQRLLQDLP LQQITQRQQQ QQKFNQINTK  120
LIQPIKRSLS SVNGATLHAP SPRSERRKNQ MKKVCQVAAD ALSSDMWSWR KYGQKPIKGS  180
PYPRGYYKCS TSKGCLARKQ VERNRSDPNM FIITYTAEHN HPMPTHRNSL AGISRHNKET  240
NSNKTTSPSP VSSPTTNSPA PENQESSRDE KEDIFEDEND DFSEGLEELE SPAAGDSLTE  300
NLPRTLQFPW MTNNAATTAA GGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-22149225380Disease resistance protein RRS1
5w3x_D2e-22149225380Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019252156.10.0PREDICTED: WRKY transcription factor 22-like
TrEMBLA0A1J6I2Z20.0A0A1J6I2Z2_NICAT; Wrky transcription factor 22
STRINGXP_009758175.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25912457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.12e-64WRKY family protein