PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf04819g03003.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GRAS

Protein Properties

Length: 831aa MW: 94079.2 Da PI: 5.5356

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf04819g03003.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	257.4	5.1e-79	548	829	88	374
GRAS 88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa.sRpegppslRiTgvgspesgskeeleetgerLakfAee 171 P+ ++ +++ qaI e v+g++++H +Df+i G+Q L+qaLa +R+++ l+iT++g+ ++ke++eetg+rL++fA++ Niben101Scf04819g03003.1 548 IPFSQVMQFAGVQAIIENVKGATKIHLVDFNIRTGIQCTGLMQALAeERDRPIELLKITAIGH---QEKEKIEETGKRLQSFANS 629 69******************************************88889999*****...579************ PP GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256 l++pf+fn++ +++++dl+ e+ +vk +E++aV + + l ++ + +++ d++++++++l+P vv+v+e ea+hns+sFl+r Niben101Scf04819g03003.1 630 LNLPFSFNIVFMSDMKDLRAESVNVKADETVAVYCNIVLRTMI----CRPEYMDNTMRVIRGLRPSVVIVCEVEANHNSPSFLNR 710 **************************************9....55666667************************** PP GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklll 341 f+eal +ys+lfd++e + re+ r+ +E + +g+ i+n+va+egaer+ r+ +l Wr+ + ++G+ +++lse+ qa+l+l Niben101Scf04819g03003.1 711 FVEALFFYSVLFDCFEDCMDRENLVRKRIEVFHIGEGIRNMVAAEGAERFTRNMKLDVWRAYFARFGMVEMELSESSWYQANLIL 795 ********************************************************************************* PP GRAS 342 rkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++++ + +v+++ ++l+ gWk+ p+ svS W+ Niben101Scf04819g03003.1 796 KQFSqGSSCNVQNDGKALLVGWKGTPIESVSIWK 829 88889**********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	34.938	421	808	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.8E-76	548	829	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 831 aa Download sequence Send to blast
MGSSSQICHQ EEKKTISFFD YVANMLKESF QCLTIILLSL LLPLSFIVLA RLSVARYFIT 60 ISAEYYTLRD SLLVKIFLYA NPNILHVLVP LVAVSSLIHG LTGRTILFIK QSADHVTFKP 120 CLYTAWFFLF MLQICVCIGI EGSIAIGIGG SSSFSHHERL CLLSRVIFFF GLHETTSFWA 180 KKVVKPVVDD TVFGVATADD RVVEKVAMAM SFGVLWWWKL RDEVESLVVV AEVKRELIGS 240 VDLVDFVGWW LYYLTLAIGM VKIVKGLIWV CFVLFCGNVV DLENADYSTR NDEKGGHNQL 300 QECGRNELVD NGVVDPWFGL DSEDLDSLYS VLDLKYQENT SDKHVQLSED QQQNISDYCT 360 QSDDSSSNMD FPLQPVQIQS TFEASNRIQP QVPRPGNFHG EKTNPISSAS LELLNNCGRL 420 FKKSSEENLS NIHINEAHVS NISKLSTEEI LRVAGERYIQ YSTQRVDGLS MFMHPYASAL 480 SGLSIEQTRD MELVHLLLAA AEEVDQQQFH LASQSVARRS PSFERKLRYL STLALGTTPE 540 ALTCHTEIPF SQVMQFAGVQ AIIENVKGAT KIHLVDFNIR TGIQCTGLMQ ALAEERDRPI 600 ELLKITAIGH QEKEKIEETG KRLQSFANSL NLPFSFNIVF MSDMKDLRAE SVNVKADETV 660 AVYCNIVLRT MICRPEYMDN TMRVIRGLRP SVVIVCEVEA NHNSPSFLNR FVEALFFYSV 720 LFDCFEDCMD RENLVRKRIE VFHIGEGIRN MVAAEGAERF TRNMKLDVWR AYFARFGMVE 780 MELSESSWYQ ANLILKQFSQ GSSCNVQNDG KALLVGWKGT PIESVSIWKF L

Sequence ? help Back to Top

Protein Sequence Length: 831 aa Download sequence Send to blast

MGSSSQICHQ EEKKTISFFD YVANMLKESF QCLTIILLSL LLPLSFIVLA RLSVARYFIT  60
ISAEYYTLRD SLLVKIFLYA NPNILHVLVP LVAVSSLIHG LTGRTILFIK QSADHVTFKP  120
CLYTAWFFLF MLQICVCIGI EGSIAIGIGG SSSFSHHERL CLLSRVIFFF GLHETTSFWA  180
KKVVKPVVDD TVFGVATADD RVVEKVAMAM SFGVLWWWKL RDEVESLVVV AEVKRELIGS  240
VDLVDFVGWW LYYLTLAIGM VKIVKGLIWV CFVLFCGNVV DLENADYSTR NDEKGGHNQL  300
QECGRNELVD NGVVDPWFGL DSEDLDSLYS VLDLKYQENT SDKHVQLSED QQQNISDYCT  360
QSDDSSSNMD FPLQPVQIQS TFEASNRIQP QVPRPGNFHG EKTNPISSAS LELLNNCGRL  420
FKKSSEENLS NIHINEAHVS NISKLSTEEI LRVAGERYIQ YSTQRVDGLS MFMHPYASAL  480
SGLSIEQTRD MELVHLLLAA AEEVDQQQFH LASQSVARRS PSFERKLRYL STLALGTTPE  540
ALTCHTEIPF SQVMQFAGVQ AIIENVKGAT KIHLVDFNIR TGIQCTGLMQ ALAEERDRPI  600
ELLKITAIGH QEKEKIEETG KRLQSFANSL NLPFSFNIVF MSDMKDLRAE SVNVKADETV  660
AVYCNIVLRT MICRPEYMDN TMRVIRGLRP SVVIVCEVEA NHNSPSFLNR FVEALFFYSV  720
LFDCFEDCMD RENLVRKRIE VFHIGEGIRN MVAAEGAERF TRNMKLDVWR AYFARFGMVE  780
MELSESSWYQ ANLILKQFSQ GSSCNVQNDG KALLVGWKGT PIESVSIWKF L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	4e-32	543	829	82	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016477658.1	0.0	PREDICTED: DELLA protein RGL1-like
TrEMBL	K4C3Z1	0.0	K4C3Z1_SOLLC; Uncharacterized protein
STRING	Solyc06g009610.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4694	18	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	9e-45	RGA-like 1