PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04790g01013.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 61aa    MW: 6931.09 Da    PI: 10.9212
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04790g01013.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF978.1e-31959151
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                              krienk+nrqvtfskRr g+lKKA+E+SvLCdaev +i+fs++gkl+eys+
  Niben101Scf04790g01013.1  9 KRIENKINRQVTFSKRRSGLLKKAQEISVLCDAEVGLIVFSTKGKLFEYST 59
                              79***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.0E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.917161IPR002100Transcription factor, MADS-box
CDDcd002651.39E-34261No hitNo description
SuperFamilySSF554557.46E-29261IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003195.6E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-313859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 61 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAQEISVLCD AEVGLIVFST KGKLFEYSTD  60
S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A2e-20160161MEF2 CHIMERA
6bz1_B2e-20160161MEF2 CHIMERA
6bz1_C2e-20160161MEF2 CHIMERA
6bz1_D2e-20160161MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009625854.11e-35PREDICTED: agamous-like MADS-box protein AGL8 homolog
RefseqXP_019238190.11e-35PREDICTED: agamous-like MADS-box protein AGL8 homolog
SwissprotO223284e-36AGL8_SOLCO; Agamous-like MADS-box protein AGL8 homolog
TrEMBLM1CAG58e-35M1CAG5_SOLTU; Uncharacterized protein
TrEMBLQ6UGS35e-35Q6UGS3_PETHY; MADS-box protein FBP26 (Fragment)
STRINGXP_004172815.13e-35(Cucumis sativus)
STRINGXP_009792071.14e-35(Nicotiana sylvestris)
STRINGXP_009625854.14e-35(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.16e-37AGAMOUS-like 8