PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf04748g03007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 215aa MW: 24623.3 Da PI: 9.6578 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.8 | 6.3e-16 | 13 | 94 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 +k+g l +p f+ ++ +g + + + ++g++W vkl + y +++GW++F+++++L+ gD++vF+++g++e Niben101Scf04748g03007.1 13 PI--QPGFKNG-LKIPVGFL-KYlKGHE--HNEYATLRRDGKKWLVKL--ND----YRFEAGWSDFAEQHDLQLGDMLVFRHEGNME 87 44..4556665.********.6645553..335666778*********..55....55*************************9999 PP E..EEEEE- CS B3 90 felvvkvfr 98 f v +f+ Niben101Scf04748g03007.1 88 F--EVVIFD 94 9..777776 PP | |||||||
2 | B3 | 41.7 | 2.1e-13 | 146 | 202 | 29 | 87 |
-..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 29 kkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 + ++ +++l+de rsW+v+l + + ++ +t+GW +F a+gL++gD F+l+++ Niben101Scf04748g03007.1 146 N--RKCEMILKDEAQRSWSVRLGPQTDRHHFGITSGWAKFRAAKGLQVGDAYKFELIKN 202 3..4458***************445555559999*********************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 9.0E-23 | 3 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.28E-20 | 4 | 95 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.746 | 7 | 96 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.55E-19 | 8 | 94 | No hit | No description |
SMART | SM01019 | 2.6E-15 | 10 | 96 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-12 | 18 | 94 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.0E-14 | 121 | 210 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.02E-14 | 121 | 210 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 2.2E-6 | 125 | 214 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.49E-11 | 143 | 203 | No hit | No description |
Pfam | PF02362 | 1.3E-11 | 146 | 203 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.475 | 150 | 213 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MEVPPKKPHF FKPIQPGFKN GLKIPVGFLK YLKGHEHNEY ATLRRDGKKW LVKLNDYRFE 60 AGWSDFAEQH DLQLGDMLVF RHEGNMEFEV VIFDSTTDIT KKPSNTIPLN AQACTPTSGD 120 NDLPYFTSTI KPYCISKPVL SSGLMNRKCE MILKDEAQRS WSVRLGPQTD RHHFGITSGW 180 AKFRAAKGLQ VGDAYKFELI KNGKIPIAHF HYISH |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009801949.1 | 1e-129 | PREDICTED: B3 domain-containing protein REM14-like | ||||
Refseq | XP_016464850.1 | 1e-129 | PREDICTED: B3 domain-containing protein REM14-like | ||||
TrEMBL | A0A1S3ZJZ8 | 1e-128 | A0A1S3ZJZ8_TOBAC; B3 domain-containing protein REM14-like | ||||
TrEMBL | A0A1U7YRV2 | 1e-128 | A0A1U7YRV2_NICSY; B3 domain-containing protein REM14-like | ||||
STRING | XP_009801949.1 | 1e-129 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA322 | 15 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31640.1 | 1e-30 | B3 family protein |