PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04748g02012.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 519aa    MW: 60158.2 Da    PI: 10.1037
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04748g02012.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3451.9e-141494599
                              -..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                        B3  5 ltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90
                                    +k++ l +p+ f+ ++ +g ++e     +  + +++W vkl  ++++    l++GW++F+++++L+ gD ++F+++g++ef
  Niben101Scf04748g02012.1 14 I--QPGFKRA-LKIPNGFL-KYlKGHEHE---HAVLKRGSKKWLVKL--NGQR----LEEGWEKFAEEHDLRLGDLLIFRHEGEMEF 87
                              4..4556666.9*******.564666444...57778899*******..8887....***********************9999999 PP

                              ..EEEEE-S CS
                        B3 91 elvvkvfrk 99
                                 v++f++
  Niben101Scf04748g02012.1 88 --QVTIFDS 94
                              ..9999986 PP
2B347.72.7e-15140223592
                               -..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                        B3   5 ltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                               +++s+ +++g ++lp kf++++   +k+++  l+++de+ rsW++kl    +  ++++++ W +F  +n+Lk+gD +vF+++ + 
  Niben101Scf04748g02012.1 140 TVRSYCFSKGYFRLPLKFTKANgFRNKKCG--LIIRDERQRSWNLKL--YTSCHHVYIGGRWAKFRAENDLKVGDRIVFEVVTN- 219
                               57899*****************74445565..999************..999999*************************8764. PP

                               EE.. CS
                        B3  89 efel 92 
                               ++++
  Niben101Scf04748g02012.1 220 GERP 223
                               4444 PP
3B354.52.2e-17286372596
                               -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                        B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                               ++++++l+++ l++p +fa++hg+  ++  t+ ++d + rsW+++l    +s  +++++GW +F+ an LkegD v+F  +  ++
  Niben101Scf04748g02012.1 286 TMKPYNLSKCFLRVPSTFARQHGLRDRKC-TILIRD-EQRSWTFTL--YSCSMVTYIGGGWHNFCIANCLKEGDRVMFGIVA-NG 365
                               6799******************9997664.777777.78*******..999999*************************876.55 PP

                               E..EEEE CS
                        B3  90 felvvkv 96 
                               +++ +k+
  Niben101Scf04748g02012.1 366 EKPILKF 372
                               5566665 PP
4B356.16.6e-18430515394
                               EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                        B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                               +++ ++++l+++ l +p +fa++hg+   +  t++++d + rsW++kl    +++ +++++GW+eF+ an LkegD v+F+ +  
  Niben101Scf04748g02012.1 430 STM-KPYYLSKRFLHVPSPFARQHGLRDGR-CTIMIRD-EQRSWTFKL--YSCGRFTYIGGGWREFCIANFLKEGDRVMFEIVA- 508
                               444.778888888***********998755.5999999.779******..999999*************************877. PP

                               SEE..EE CS
                        B3  88 sefelvv 94 
                               +++++ +
  Niben101Scf04748g02012.1 509 NGEKPIL 515
                               4444554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-20497IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-18597IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.125795IPR003340B3 DNA binding domain
CDDcd100172.40E-13893No hitNo description
SMARTSM010193.8E-151095IPR003340B3 DNA binding domain
PfamPF023621.9E-101994IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-14134227IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.87E-16136228IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.194136230IPR003340B3 DNA binding domain
SMARTSM010191.3E-8136231IPR003340B3 DNA binding domain
PfamPF023628.0E-14140225IPR003340B3 DNA binding domain
CDDcd100171.18E-11142215No hitNo description
SuperFamilySSF1019362.94E-19278372IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-19279372IPR015300DNA-binding pseudobarrel domain
CDDcd100173.92E-14281374No hitNo description
SMARTSM010193.0E-13282376IPR003340B3 DNA binding domain
PROSITE profilePS5086311.053282375IPR003340B3 DNA binding domain
PfamPF023621.4E-14285373IPR003340B3 DNA binding domain
SuperFamilySSF1019365.49E-20423517IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.3E-20425517IPR015300DNA-binding pseudobarrel domain
CDDcd100174.70E-16426518No hitNo description
PROSITE profilePS5086312.337427519IPR003340B3 DNA binding domain
SMARTSM010193.8E-14428519IPR003340B3 DNA binding domain
PfamPF023628.4E-16429516IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MKVRPAKPQF FKPIQPGFKR ALKIPNGFLK YLKGHEHEHA VLKRGSKKWL VKLNGQRLEE  60
GWEKFAEEHD LRLGDLLIFR HEGEMEFQVT IFDSSHCDRE YAEYLQDEEE AHIVKDPSKK  120
FEITEAAPQN PIGQSHVVCT VRSYCFSKGY FRLPLKFTKA NGFRNKKCGL IIRDERQRSW  180
NLKLYTSCHH VYIGGRWAKF RAENDLKVGD RIVFEVVTNG ERPIWKFHRL RKNASLQPKG  240
KRTNSDNERV SSPEKPNSNI ISSCKAVPNV EAAKDLHLGH PHFICTMKPY NLSKCFLRVP  300
STFARQHGLR DRKCTILIRD EQRSWTFTLY SCSMVTYIGG GWHNFCIANC LKEGDRVMFG  360
IVANGEKPIL KFHDLRDNAS FRPEGKKTNS DTEKVSTQEK PKSNIISSRK AVPDVEAAKD  420
MHLGQPHFIS TMKPYYLSKR FLHVPSPFAR QHGLRDGRCT IMIRDEQRSW TFKLYSCGRF  480
TYIGGGWREF CIANFLKEGD RVMFEIVANG EKPILKFHG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009781505.10.0PREDICTED: B3 domain-containing protein REM14-like isoform X1
RefseqXP_009781513.10.0PREDICTED: B3 domain-containing protein REM14-like isoform X1
RefseqXP_009781519.10.0PREDICTED: B3 domain-containing protein REM14-like isoform X1
RefseqXP_009781527.10.0PREDICTED: B3 domain-containing protein REM14-like isoform X1
RefseqXP_009781534.10.0PREDICTED: B3 domain-containing protein REM10-like isoform X2
RefseqXP_016454029.10.0PREDICTED: B3 domain-containing protein REM14-like isoform X1
RefseqXP_016454030.10.0PREDICTED: B3 domain-containing protein REM14-like isoform X1
RefseqXP_016454031.10.0PREDICTED: B3 domain-containing protein REM14-like isoform X1
RefseqXP_016454032.10.0PREDICTED: B3 domain-containing protein REM14-like isoform X1
RefseqXP_016454033.10.0PREDICTED: B3 domain-containing protein REM14-like isoform X1
RefseqXP_016454034.10.0PREDICTED: B3 domain-containing protein REM14-like isoform X1
RefseqXP_016454035.10.0PREDICTED: B3 domain-containing protein REM10-like isoform X2
TrEMBLA0A1S3YP650.0A0A1S3YP65_TOBAC; B3 domain-containing protein REM14-like isoform X1
TrEMBLA0A1S3YPX60.0A0A1S3YPX6_TOBAC; B3 domain-containing protein REM10-like isoform X2
TrEMBLA0A1U7X3S60.0A0A1U7X3S6_NICSY; B3 domain-containing protein REM14-like isoform X1
TrEMBLA0A1U7X3U20.0A0A1U7X3U2_NICSY; B3 domain-containing protein REM10-like isoform X2
STRINGXP_009781505.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.13e-53B3 family protein