PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf04690g02006.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 361aa MW: 40576 Da PI: 5.7826

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf04690g02006.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.6	7e-06	216	256	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r RR+++ ++ L +llP++ kK++ a++L +A +Y+ Lq Niben101Scf04690g02006.1 216 RIRRQKLSEKTRSLEKLLPWD-----KKMDTATMLGEAYKYVEFLQ 256 89****************9.....9**************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.096	206	255	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.8E-4	212	261	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.49E-9	214	265	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.15E-5	216	260	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.9E-8	216	263	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MERKPLLQPE FNAGEAFLPL MASDEAFING LYNGLSYQSV LSLSLDHYNH GEELKPLSLP 60 YFHPSLANDI PYAAAAASQM QQSLATFDFS TTLDFPWVKE TENILDADQK LKLPKLEPVT 120 ENLQLYRYNN EIFLNEPPFN YFSNGISDDS GLGYGRLPDL RCLEMPNYLE FHLGDSSSTV 180 NGVEPVSVNS QVLMSNQVGT MPKSCKQSAY GSCTTRIRRQ KLSEKTRSLE KLLPWDKKMD 240 TATMLGEAYK YVEFLQAQVR VLQSMPVLVE GGASSSSSGS EDRNGKSSYV NEVKANSFYG 300 PLARLNRQQL LQVVLNSPVA QTYLYSKGCC IYSVEQLLQL RKIAQRNALY RQTLFYSGMF 360 S

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MERKPLLQPE FNAGEAFLPL MASDEAFING LYNGLSYQSV LSLSLDHYNH GEELKPLSLP  60
YFHPSLANDI PYAAAAASQM QQSLATFDFS TTLDFPWVKE TENILDADQK LKLPKLEPVT  120
ENLQLYRYNN EIFLNEPPFN YFSNGISDDS GLGYGRLPDL RCLEMPNYLE FHLGDSSSTV  180
NGVEPVSVNS QVLMSNQVGT MPKSCKQSAY GSCTTRIRRQ KLSEKTRSLE KLLPWDKKMD  240
TATMLGEAYK YVEFLQAQVR VLQSMPVLVE GGASSSSSGS EDRNGKSSYV NEVKANSFYG  300
PLARLNRQQL LQVVLNSPVA QTYLYSKGCC IYSVEQLLQL RKIAQRNALY RQTLFYSGMF  360
S

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009790451.1	0.0	PREDICTED: transcription factor bHLH117
TrEMBL	A0A1U7XLG3	0.0	A0A1U7XLG3_NICSY; transcription factor bHLH117
STRING	XP_009790451.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11250	18	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22100.1	5e-16	bHLH family protein