PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf04684g03016.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 246aa MW: 26832.3 Da PI: 8.5539 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.1 | 1.3e-15 | 14 | 57 | 1 | 44 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 +g+WT+eEd +lv++++ +G g+W++ ++ g+ R++k+c++rw Niben101Scf04684g03016.1 14 KGAWTKEEDHRLVNYIRSHGEGCWRSLPKAAGLQRCGKSCRLRW 57 79****************************************** PP | |||||||
2 | Myb_DNA-binding | 25.7 | 2.8e-08 | 56 | 79 | 23 | 47 |
-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47 +W+ Ia +++ gRt++++k++w+++ Niben101Scf04684g03016.1 56 RWSVIAGRLP-GRTDNEIKNYWNTH 79 4*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-17 | 5 | 56 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.922 | 9 | 65 | IPR017930 | Myb domain |
SMART | SM00717 | 6.2E-13 | 13 | 82 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.99E-17 | 14 | 81 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.1E-13 | 14 | 57 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.54E-11 | 16 | 80 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.0E-12 | 57 | 81 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MGRSPCCEKT HTNKGAWTKE EDHRLVNYIR SHGEGCWRSL PKAAGLQRCG KSCRLRWSVI 60 AGRLPGRTDN EIKNYWNTHI KRKLISRGLD PHTHRPLNAA TAIATATSTS TATATENICL 120 DFRNTSVAAT PLSLNDQNPT NYSSSLEEET KCSSSTTEER PPPLEPAAAL VAATEKSSGE 180 VMINLELSIG LPFQAMAAQR QPTTAAPVAA TSLVEKAVCL CWQIGSQSGQ QFCGKCQTTN 240 GFYRYC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009772294.1 | 1e-148 | PREDICTED: myb-related protein 330-like | ||||
Refseq | XP_016495904.1 | 1e-148 | PREDICTED: myb-related protein 330-like | ||||
Swissprot | P81395 | 2e-77 | MYB30_ANTMA; Myb-related protein 330 | ||||
TrEMBL | A0A1S4C4A4 | 1e-146 | A0A1S4C4A4_TOBAC; myb-related protein 330-like | ||||
TrEMBL | A0A1U7WCB1 | 1e-146 | A0A1U7WCB1_NICSY; myb-related protein 330-like | ||||
STRING | XP_009772294.1 | 1e-147 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09460.1 | 1e-55 | myb domain protein 6 |
Publications ? help Back to Top | |||
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