PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf04675g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 209aa MW: 23895.8 Da PI: 6.6716 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.2 | 8.2e-18 | 14 | 64 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT......-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg......tWktIartmgkgRtlkqcksrwqk 46 rg W++eEde+l+++ ++G + +W+ Ia++++ gRt++++k++w++ Niben101Scf04675g00001.1 14 RGQWSPEEDEILKNYLLKHGLKrcgkscRWSVIASKLP-GRTDNDVKNHWNT 64 89************************************.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.22E-16 | 3 | 75 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-21 | 5 | 72 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.309 | 9 | 70 | IPR017930 | Myb domain |
SMART | SM00717 | 2.6E-15 | 13 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-15 | 14 | 64 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.84E-13 | 17 | 66 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MGRTPCCDKT KVKRGQWSPE EDEILKNYLL KHGLKRCGKS CRWSVIASKL PGRTDNDVKN 60 HWNTKLKKKL LATNANSTSN FDDSKQVFHS SSMVPKEEEE QAAYSPVQFP VPYWDSGGFS 120 SILNNNKSIV QHDQKQFPLP RFTKDYSKIS TSREEPMNFG SSTVDMHENI DLAWFNTFEG 180 FPMDDEIMGA GLWTQQSVLE DIDFPVTFS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009800251.1 | 1e-130 | PREDICTED: transcription factor RAX1-like | ||||
TrEMBL | A0A1U7YE68 | 1e-129 | A0A1U7YE68_NICSY; transcription factor RAX1-like | ||||
STRING | XP_009800251.1 | 1e-129 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15590 | 5 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23000.1 | 4e-23 | myb domain protein 37 |