PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf04671g01011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | YABBY | ||||||||
Protein Properties | Length: 143aa MW: 15951.4 Da PI: 9.1366 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 85.5 | 1.5e-26 | 8 | 78 | 4 | 75 |
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleel 75 ssse+vCyv+CnfC+tilavsvP ts++++vtv+CGhC++llsvn+ q l+ ++ l+++ + ++ + Niben101Scf04671g01011.1 8 SSSSERVCYVHCNFCKTILAVSVPCTSMMTIVTVKCGHCAKLLSVNIGSLLQSLSLQD-LQKQQRSNIEDAS 78 6899***********************************************9999888.8999888887655 PP | |||||||
2 | YABBY | 116.4 | 4.9e-36 | 73 | 134 | 108 | 170 |
YABBY 108 evprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++ + Pek+qrvPsaynrfikeei rikasnPdi+hreafs+aaknWahfP+ihfgl Niben101Scf04671g01011.1 73 NIEDAS-KACAPEKKQRVPSAYNRFIKEEIPRIKASNPDITHREAFSTAAKNWAHFPHIHFGL 134 333333.35579*************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 3.5E-35 | 70 | 134 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 4.45E-8 | 78 | 127 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 3.7E-5 | 82 | 128 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence Send to blast |
MSLDITYSSS SERVCYVHCN FCKTILAVSV PCTSMMTIVT VKCGHCAKLL SVNIGSLLQS 60 LSLQDLQKQQ RSNIEDASKA CAPEKKQRVP SAYNRFIKEE IPRIKASNPD ITHREAFSTA 120 AKNWAHFPHI HFGLKLEGNK QAN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019234442.1 | 6e-91 | PREDICTED: axial regulator YABBY 5-like isoform X1 | ||||
Swissprot | Q9XFB0 | 3e-59 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | A0A1J6KYN5 | 1e-89 | A0A1J6KYN5_NICAT; Putative axial regulator yabby 2 | ||||
STRING | XP_009792033.1 | 6e-88 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA381 | 24 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 3e-57 | YABBY family protein |
Publications ? help Back to Top | |||
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