PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04505g00003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 649aa    MW: 71196.8 Da    PI: 7.8907
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04505g00003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH201.2e-06280300526
                               --SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                               +C+ f++ G C++Gd C +aHg
  Niben101Scf04505g00003.1 280 PCPEFRK-GACHRGDMCEYAHG 300
                               8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484033.73E-1617152IPR020683Ankyrin repeat-containing domain
PfamPF127961.5E-953128IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.53959158IPR020683Ankyrin repeat-containing domain
CDDcd002041.89E-1459137No hitNo description
Gene3DG3DSA:1.25.40.204.9E-1659139IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0425989IPR002110Ankyrin repeat
SMARTSM002480.007694126IPR002110Ankyrin repeat
PROSITE profilePS5008811.16794129IPR002110Ankyrin repeat
SMARTSM003563.9E-4275301IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.352280302IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4308338IPR000571Zinc finger, CCCH-type
SMARTSM0035641310333IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
MTMNNLTVET VDTFASLLEL AANNDIEAFK RWIERDLSSI HEVGQWYERQ KGSKQMVLEH  60
RTALMIAATY GSIDVLKLIL SVPDVDVNRS CGHDKSTALH CAASGGSLNA AEVVKLLLGA  120
GADPMSKDVD GRCPIDVIVV SPNFLSVKSS LKNLLKTGGI RDCELRVSIA TSNSNSPPRS  180
PSRGNRSPSS ISDSNSSPKS AKSNDTPVYS MPEKKEYPID PSLPDIKNYI YSTDEFRMFS  240
FKIRPCSRAY SHDWTECPFV HPGENARRRD PRKYHYSCVP CPEFRKGACH RGDMCEYAHG  300
VFECWLHPAQ YRTRLCKDGT DCNRRVCFFA HTQEELRPLY VSTGSAVPSP RGSTAAASAM  360
DFAAAMGLIP GSPSSVSVMS PSPFSPPMSP SANGISSMGW LQQNVPALHL PGSFLHSSRL  420
RSSLNARDIP AADLNAYPDF DVQWQLLNEF SCLSQRNMSS NSFNCSPRQT SHARANLEDL  480
FSAESSSPRY SDQALSQAGF SPTHKSTVCS QLQQQQSLLS PINTNFSPRN VENPLLQASL  540
GVPSTGRMSS RAMEPISPRS PRVSILAQRD KQHQFRSLSS RDLGSNVSAI VGSSADTWGT  600
AMGKPDWTVS TGEFSRLRRS SSFELANNGE EPDISWVQSL VKATRDDEG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009804762.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
RefseqXP_016472211.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A1S4A6L80.0A0A1S4A6L8_TOBAC; zinc finger CCCH domain-containing protein 30-like
TrEMBLA0A1U7YL130.0A0A1U7YL13_NICSY; zinc finger CCCH domain-containing protein 30-like
STRINGXP_009804762.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8832488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]