PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf04499g02006.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 349aa MW: 39197.1 Da PI: 8.302

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf04499g02006.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	53	9.1e-17	23	105	2	72
trihelix 2 WtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 Wt +e+++Liea++ ++er +++ + +W++v +++++ g+ rs++qC++kw+nl +++kk++e e++ + Niben101Scf04499g02006.1 23 WTVEETMVLIEAKKMDDERRMKRQgegtsteirgnkPGELRWKWVEDYCWKMGCLRSQNQCNDKWDNLMRDFKKVREYERRVA 105 ***********977776665433455556666558899************************************99864 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.166	15	91	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	3.9E-4	17	92	IPR009057	Homeodomain-like
Pfam	PF13837	2.6E-13	22	102	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MDRVVGNQSG GSNMLRDYRK GNWTVEETMV LIEAKKMDDE RRMKRQGEGT STEIRGNKPG 60 ELRWKWVEDY CWKMGCLRSQ NQCNDKWDNL MRDFKKVREY ERRVAEKGDD GNNSNNQGII 120 IKSYWKIERS ERKEKNLPTN MLPEIYEALV QVVDRKCTQK MLVGGGGGGT FAAAVSLNQS 180 TSLINSLSPT LQQQSFQAQI AALPLPPPPP TLSPPAVVVQ QSAQPPSLPY TQPFPAVDPD 240 RSEHSDSPAK RRRKGEGEGT SSGNNNNLQE VGSAIFKSAA IIAETIQASE EREERRHREL 300 LSLHERTLQI EESKAEINRQ GINGLVDSIN RLANSILSLA SEDFRMVGQ

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MDRVVGNQSG GSNMLRDYRK GNWTVEETMV LIEAKKMDDE RRMKRQGEGT STEIRGNKPG  60
ELRWKWVEDY CWKMGCLRSQ NQCNDKWDNL MRDFKKVREY ERRVAEKGDD GNNSNNQGII  120
IKSYWKIERS ERKEKNLPTN MLPEIYEALV QVVDRKCTQK MLVGGGGGGT FAAAVSLNQS  180
TSLINSLSPT LQQQSFQAQI AALPLPPPPP TLSPPAVVVQ QSAQPPSLPY TQPFPAVDPD  240
RSEHSDSPAK RRRKGEGEGT SSGNNNNLQE VGSAIFKSAA IIAETIQASE EREERRHREL  300
LSLHERTLQI EESKAEINRQ GINGLVDSIN RLANSILSLA SEDFRMVGQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009614094.1	0.0	PREDICTED: trihelix transcription factor ASR3-like isoform X2
TrEMBL	A0A1S4CKL3	0.0	A0A1S4CKL3_TOBAC; trihelix transcription factor ASR3-like
STRING	XP_009614093.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4821	22	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	1e-66	Trihelix family protein