PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf04462g01007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | SBP | ||||||||
Protein Properties | Length: 249aa MW: 28504.2 Da PI: 5.8835 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 23.1 | 1.9e-07 | 153 | 174 | 3 | 24 |
SSTT-----TT--HHHHHTT-- CS SBP 3 qvegCeadlseakeyhrrhkvC 24 q++gC+adl++ak+yhrrh+v Niben101Scf04462g01007.1 153 QADGCNADLTHAKRYHRRHRVP 174 899*****************93 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.6E-6 | 149 | 173 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 4.19E-6 | 152 | 173 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
LIGSEQLGEI MMDYEWETVE ETTQETDQNN LFFDPFVNHH AHFSPIRNHL DQQQQQIQNH 60 QFQTTPNNNH FSSLNNSHTY DVPYSQTQHT SMLYNLPVRP GSIWFYQKAN PSLWVNWVEF 120 CGRAYFASSE DDFVSWLFRR TRAVEAGSVN SRQADGCNAD LTHAKRYHRR HRVPCLSEFD 180 NGEQKLPDLN IQTPAESGAH SSTVTVAISP PRISMDCFWQ RTYQQAAAIA DATTTTSSST 240 TSSLFFSNG |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009782498.1 | 8e-78 | PREDICTED: squamosa promoter-binding-like protein 8 isoform X1 | ||||
TrEMBL | A0A1U7WV66 | 2e-76 | A0A1U7WV66_NICSY; squamosa promoter-binding-like protein 8 isoform X1 | ||||
STRING | XP_009782498.1 | 3e-77 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4846 | 23 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02065.1 | 2e-18 | squamosa promoter binding protein-like 8 |