PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04418g09009.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Dof
Protein Properties Length: 321aa    MW: 35657.4 Da    PI: 6.28
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04418g09009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof116.88.5e-371369561
                    zf-Dof  5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                              a +cprC s ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rk+++ 
  Niben101Scf04418g09009.1 13 APTCPRCGSINTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKSRRG 69
                              568**************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-24659IPR003851Zinc finger, Dof-type
PfamPF027011.9E-311468IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.4811468IPR003851Zinc finger, Dof-type
PROSITE patternPS0136101652IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MERGIWKTNV EMAPTCPRCG SINTKFCYYN NYSLTQPRYF CKGCRRYWTK GGSLRNVPVG  60
GGCRKSRRGK SSSSSIRSSL TDHHHGLISR NLAREINGLN NPSNNIDQST TSLAQGGDHH  120
GPSIDLALVY ANFLNDSSKL QPEVHHQNLE LPELLPNDHH QAAVVGPSFV FSDMINMEFA  180
SDLGQETGLT DGDGVYFSGI DEKQQTMQHV MKHNDDVHYT NMKVNANILN NELGDYMQLP  240
PLPCEELGVS SEGMAWSNSH DDHHMVFNND ILINTSHSST GGLEPEPEPE ILAAQDPSHH  300
HANANDRSIF SLSNFGNIFR P
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00405DAPTransfer from AT3G52440Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009773208.10.0PREDICTED: dof zinc finger protein DOF2.1-like
RefseqXP_016474876.10.0PREDICTED: dof zinc finger protein DOF2.1-like
TrEMBLA0A1S4AE200.0A0A1S4AE20_TOBAC; dof zinc finger protein DOF2.1-like
TrEMBLA0A1U7W3N10.0A0A1U7W3N1_NICSY; dof zinc finger protein DOF2.1-like
STRINGXP_009773208.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA129631317
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52440.15e-35Dof family protein