PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf04418g04003.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TALE

Protein Properties

Length: 694aa MW: 75841.4 Da PI: 6.9467

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf04418g04003.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29	1.9e-09	393	430	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Niben101Scf04418g04003.1 393 FEHflHPYPKDSDKMMLAKQTGLTRSQVSNWFINARVR 430 554459******************************88 PP
2	BELL	112.1	3.1e-36	257	328	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kkakL+++l+eV +rY++y++q+q vis e++ag+gsak Yt+lAl++iS++FrcLkdai++qi Niben101Scf04418g04003.1 257 ERQEIQMKKAKLVNMLDEVAQRYRHYHQQMQSVISWLEQAAGIGSAKTYTALALQTISKQFRCLKDAITGQI 328 79*********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	2.7E-55	177	326	IPR006563	POX domain
Pfam	PF07526	5.2E-46	187	325	IPR006563	POX domain
PROSITE profile	PS50071	12.147	371	434	IPR001356	Homeobox domain
CDD	cd00086	4.43E-12	374	435	No hit	No description
SMART	SM00389	9.7E-10	374	438	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.99E-17	375	440	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.2E-28	377	440	IPR009057	Homeodomain-like
Pfam	PF05920	3.7E-18	391	430	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 694 aa Download sequence Send to blast
MAAYFHGNSE IKGGNDGLQT LILMNPAGYV GFSETQHHQP PAGGSNLVFF NSNPPGNSLS 60 LPHAPPSSQQ QFVGIPLATS AFTAPSSSQD GTTTPTVHSH HDISALHGFL ARSHEYGFYN 120 PSNDITEVRE VTRSQQQGLS LNLSSQQPGF GNFRPEREEL MTTVSPTAGG GSSSSASATQ 180 SVPLCPKYLK AAQELLDEVV NVGKAVKTSR TGEDVSDAQK SKNNGESSGN TATAAAAAQE 240 GGESNSKRDG AELSTAERQE IQMKKAKLVN MLDEVAQRYR HYHQQMQSVI SWLEQAAGIG 300 SAKTYTALAL QTISKQFRCL KDAITGQIRS ASKTLGEEDN IGGKIEGSRL KFVDNQIRQQ 360 RALQQLGMIQ HNAWRPQRGL PERAVSVLRA WLFEHFLHPY PKDSDKMMLA KQTGLTRSQV 420 SNWFINARVR LWKPMVEEMY LEEIKEQEQN GSDLEKTSKL LEQNEDSTSR SIPPQERSPR 480 SDSQNKSFLS KQDNNLENLN PASTIPISNT TSISPTVLSI RNNTGIDIGQ GSPKKLRSNE 540 MLHSPNTVPS INMDVKPNEE QMLIKFGDDR QNRDGFSLMG GPTNFMGGFG SYPIGEIGRF 600 STEQFSAPYS TSGTVSLTLG LPHSENLSMS ATHHSFLPIP TQSIQMGRGV EIGEANEFGS 660 LNTPTSAHST SVYENFNIQN RKRFAAPLLP DFVA

Sequence ? help Back to Top

Protein Sequence Length: 694 aa Download sequence Send to blast

MAAYFHGNSE IKGGNDGLQT LILMNPAGYV GFSETQHHQP PAGGSNLVFF NSNPPGNSLS  60
LPHAPPSSQQ QFVGIPLATS AFTAPSSSQD GTTTPTVHSH HDISALHGFL ARSHEYGFYN  120
PSNDITEVRE VTRSQQQGLS LNLSSQQPGF GNFRPEREEL MTTVSPTAGG GSSSSASATQ  180
SVPLCPKYLK AAQELLDEVV NVGKAVKTSR TGEDVSDAQK SKNNGESSGN TATAAAAAQE  240
GGESNSKRDG AELSTAERQE IQMKKAKLVN MLDEVAQRYR HYHQQMQSVI SWLEQAAGIG  300
SAKTYTALAL QTISKQFRCL KDAITGQIRS ASKTLGEEDN IGGKIEGSRL KFVDNQIRQQ  360
RALQQLGMIQ HNAWRPQRGL PERAVSVLRA WLFEHFLHPY PKDSDKMMLA KQTGLTRSQV  420
SNWFINARVR LWKPMVEEMY LEEIKEQEQN GSDLEKTSKL LEQNEDSTSR SIPPQERSPR  480
SDSQNKSFLS KQDNNLENLN PASTIPISNT TSISPTVLSI RNNTGIDIGQ GSPKKLRSNE  540
MLHSPNTVPS INMDVKPNEE QMLIKFGDDR QNRDGFSLMG GPTNFMGGFG SYPIGEIGRF  600
STEQFSAPYS TSGTVSLTLG LPHSENLSMS ATHHSFLPIP TQSIQMGRGV EIGEANEFGS  660
LNTPTSAHST SVYENFNIQN RKRFAAPLLP DFVA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	2e-16	380	438	5	63	Homeobox protein Meis2
3k2a_B	2e-16	380	438	5	63	Homeobox protein Meis2
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019250358.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Swissprot	Q9SJ56	1e-164	BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBL	A0A1J6I7N5	0.0	A0A1J6I7N5_NICAT; Bel1-like homeodomain protein 1
STRING	XP_009787672.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1478	24	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	1e-145	BEL1-like homeodomain 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]