PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf04406g01008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 278aa MW: 31312.9 Da PI: 7.3866 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.9 | 5.4e-14 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W+++Ed++l+d++ +G g+W++ + g+ R +k+c++rw +yl Niben101Scf04406g01008.1 16 RGLWSPDEDQKLKDYILTYGHGCWSSLPINAGLQRNGKSCRLRWINYL 63 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.7 | 8.4e-16 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg + teE+ ++ ++ +lG++ W+ Ia++++ gRt++++k++w++yl Niben101Scf04406g01008.1 69 RGIFDTEEENTILTLHGMLGNK-WSQIAQHLP-GRTDNEIKNHWHSYL 114 67799*****************.*********.************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.886 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.54E-27 | 14 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.8E-10 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.5E-12 | 16 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-20 | 17 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.96E-9 | 19 | 63 | No hit | No description |
PROSITE profile | PS51294 | 24.667 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 5.9E-14 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.6E-14 | 70 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.5E-24 | 71 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.58E-10 | 72 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MGCKQLVDKQ KSKHKRGLWS PDEDQKLKDY ILTYGHGCWS SLPINAGLQR NGKSCRLRWI 60 NYLRPGLKRG IFDTEEENTI LTLHGMLGNK WSQIAQHLPG RTDNEIKNHW HSYLKKRVAK 120 MAKNEAGQAT SGCTSLHIGN RESSPPSVKF ASQNSSPDSL ADTDQSASLL VDFTKENCKS 180 NLPKVLFSEW FSLEQFSGQE DFNNTSNQDH SKNNFGCNDS VFPDAFMQYV PLMNEVTYGN 240 HINQDFHSGT LDGISQNHSA NGFEAFISGE FNIHGHVM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-23 | 16 | 118 | 7 | 108 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009792992.1 | 0.0 | PREDICTED: transcription factor LAF1-like | ||||
Refseq | XP_016461232.1 | 0.0 | PREDICTED: transcription factor LAF1-like | ||||
TrEMBL | A0A1S3ZAI0 | 0.0 | A0A1S3ZAI0_TOBAC; transcription factor LAF1-like | ||||
TrEMBL | A0A1U7XLS7 | 0.0 | A0A1U7XLS7_NICSY; transcription factor LAF1-like | ||||
STRING | XP_009792992.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52260.1 | 5e-60 | myb domain protein 19 |