PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf04386g08002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 460aa MW: 50361.7 Da PI: 6.9457

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf04386g08002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.3	9.8e-12	397	442	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L+el+P+ +k + a++L Av+YIk+L+ Niben101Scf04386g08002.1 397 SIAERVRRTKISDRMRRLQELVPNM----DKQTNTADMLDFAVDYIKELE 442 689*******************7....688*************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.881	391	441	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.49E-15	394	453	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.00E-11	395	446	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.3E-14	396	452	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.0E-8	397	442	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.2E-12	397	447	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence Send to blast
MDQSRFQQQP INSGLTRYRS APSSYFSSLL SSTPSSGGGT NITTGGCGYA RDDFSQLQNS 60 RGSNSTDIEQ VFAKFVASIG NQGSKSGSFS SNEQIQDNPM SNMNVRSDFI VPKQEVKQQH 120 KRLTRHRSSD YSLVSQMNYQ TQAQQHSQSQ SQSQFISSVK QEPEMNYQNL GPQQIDNSKA 180 VTSLAAVDNS FTFMTSVNST RVSPVNIGGG GGADAGNTNL TRYNSSPAGF FDLINIESGY 240 GAIRGVGRYG TGANATTETS LSTPKRLKTQ VGISSGKPPA SPGLMTPISE IGDKVMEENS 300 IGDEHKNDES CIADFPIPSW EDSHILSDDF LKAEDIEIEP FSNVNASDNQ NSEGLSRPPI 360 PLSHHLSLDT STLEKLLQDS TPLNVRAKRG CATHPRSIAE RVRRTKISDR MRRLQELVPN 420 MDKQTNTADM LDFAVDYIKE LEKQVKILAE KRAKCTCTNK

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence Send to blast

MDQSRFQQQP INSGLTRYRS APSSYFSSLL SSTPSSGGGT NITTGGCGYA RDDFSQLQNS  60
RGSNSTDIEQ VFAKFVASIG NQGSKSGSFS SNEQIQDNPM SNMNVRSDFI VPKQEVKQQH  120
KRLTRHRSSD YSLVSQMNYQ TQAQQHSQSQ SQSQFISSVK QEPEMNYQNL GPQQIDNSKA  180
VTSLAAVDNS FTFMTSVNST RVSPVNIGGG GGADAGNTNL TRYNSSPAGF FDLINIESGY  240
GAIRGVGRYG TGANATTETS LSTPKRLKTQ VGISSGKPPA SPGLMTPISE IGDKVMEENS  300
IGDEHKNDES CIADFPIPSW EDSHILSDDF LKAEDIEIEP FSNVNASDNQ NSEGLSRPPI  360
PLSHHLSLDT STLEKLLQDS TPLNVRAKRG CATHPRSIAE RVRRTKISDR MRRLQELVPN  420
MDKQTNTADM LDFAVDYIKE LEKQVKILAE KRAKCTCTNK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009793126.1	0.0	PREDICTED: uncharacterized protein LOC104240039 isoform X1
Refseq	XP_016451818.1	0.0	PREDICTED: uncharacterized protein LOC107776436
TrEMBL	A0A1S3YIF4	0.0	A0A1S3YIF4_TOBAC; uncharacterized protein LOC107776436
TrEMBL	A0A1U7XU05	0.0	A0A1U7XU05_NICSY; uncharacterized protein LOC104240039 isoform X1
STRING	XP_009793126.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4605	22	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51140.1	3e-49	bHLH family protein