PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04382g00016.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 671aa    MW: 75347 Da    PI: 9.8432
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04382g00016.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding223.8e-07567616147
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                               r +++  E e lv+av+qlG+g+W+ +  +      +Rt  ++k++w ++
  Niben101Scf04382g00016.1 567 RRPFSVAEVEALVEAVEQLGTGRWRDVKIRAFeyaDHRTYVDVKDKWKTL 616
                               6789999*******************9988889999***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542363.88E-6370450IPR029071Ubiquitin-related domain
PROSITE profilePS500539.526374444IPR000626Ubiquitin domain
Gene3DG3DSA:1.10.10.601.4E-9561618IPR009057Homeodomain-like
PROSITE profilePS5129416.891562621IPR017930Myb domain
SMARTSM007172.2E-7566619IPR001005SANT/Myb domain
SuperFamilySSF466895.08E-15568649IPR009057Homeodomain-like
CDDcd116601.46E-14568618No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MSSKKRLNYG FSGYRFPVTP KAPRSVRRRH SHNNLDNDQI CAFELLAAVA GELLQESESF  60
ACSNTAEGKD GLADCRVGVK CEQLKEDKAV KPAALEQNLK HSLDKPNHVE NNIFHKHNYS  120
IMNSEFSQKD QSCAKLENCK KVDRGGKFLT EVEGRSSNLE NACNKKIETV TQKQLDDDRK  180
QTDDLTVANS CSVKGPIVEH VNNNTAINSD NSVQFPLYRA VPKPSFGKQR INVKLGIRDD  240
DENSFWSYSH SSKIRAFRKT SRIGYRRIKR ILTSRHWKIA PQLKDCERSC FNNRVKSFYQ  300
NRKRICALER CQVEIPSKRR KMSRYNSAVA YDQQASSERK SNSPEKGIKR DIIPHRGSGA  360
SASAKNHQKK DPCVKFSIKS FNIPELFIEV PETETVGSLK RSVMEAVRSI LGNGLRVGVF  420
LEGKKVRDDN RTLQQAGVSQ NGNLDSLGFT LEPSFYPVSP SLLSKDPPAS SPCVADHELT  480
RRAPSPILEL ELPSASSDPS KAKLDKHDED YHELAQSPTN PIDPTSDVAI PDSRAVVIIP  540
HLNAEALAVV PRSPKNSPSE LSQRRTRRPF SVAEVEALVE AVEQLGTGRW RDVKIRAFEY  600
ADHRTYVDVK DKWKTLVHTA SITPQQRRGK PVPQELLDRV LAAHAYWSQQ HAKQHAESLK  660
TADSQVQNVG A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A9e-615516711121Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1301320RKRICALERCQVEIPSKRRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009783131.10.0PREDICTED: telomere repeat-binding protein 4-like
RefseqXP_016497955.10.0PREDICTED: telomere repeat-binding protein 4-like
TrEMBLA0A1S4C9Z90.0A0A1S4C9Z9_TOBAC; telomere repeat-binding protein 4-like
TrEMBLA0A1U7X0E30.0A0A1U7X0E3_NICSY; telomere repeat-binding protein 4-like
STRINGXP_009783131.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20931729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-108TRF-like 2