PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04350g04004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 397aa    MW: 42863.7 Da    PI: 8.311
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04350g04004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.2e-202979256
                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                              +y+GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAaka++aa+++++g+
  Niben101Scf04350g04004.1 29 HYRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAAKAYDAAAREFRGA 79
                              6********.**********8...557*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.76E-192986No hitNo description
PfamPF008475.8E-142978IPR001471AP2/ERF domain
SMARTSM003805.7E-392992IPR001471AP2/ERF domain
PROSITE profilePS5103224.0922986IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-222987IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.2E-322986IPR001471AP2/ERF domain
PRINTSPR003675.9E-113041IPR001471AP2/ERF domain
PRINTSPR003675.9E-115268IPR001471AP2/ERF domain
PROSITE profilePS510329.084188279IPR001471AP2/ERF domain
SMARTSM003800.017238285IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-7255279IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MAPKQQGGAV AVEVTAAVGK VNEISKEVHY RGVRKRPWGR YAAEIRDPGK KSRVWLGTFD  60
TAEEAAKAYD AAAREFRGAK AKTNFPPEEE ENLKIAQNNL GVKMNTNVND NNNRSPSQSS  120
TVESSSRDGL SPAVMVDSSP LDLSLGVKFP FQNNQFRTSP ISVGFSGCGF TGATPAVNHH  180
MYYLETLARA GVINLENNRQ RKTVDFLGGN GGHGGSGSGI QSESESSSVI DFMRNDVKPT  240
TRPGLNLDLN FPPPENEAAK AYDAAATEFR GAKAKTNFPP QEEENLKIAQ NNLGVKMITN  300
VNDNNNRSPS QSSTVESSSR DGLSPAVMVD SSPFDLSLGV KFPFQNNQFR PSPISVGFFG  360
CGFTGATPAV NHHMYYLEAL ARAGCNLSCL LVDPRHK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-212986260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001311895.11e-134ethylene-responsive transcription factor 4-like
RefseqXP_009622637.11e-134PREDICTED: ethylene-responsive transcription factor 4
TrEMBLR4WAH71e-132R4WAH7_TOBAC; Ethylene response factor #111
STRINGXP_009622637.11e-133(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.12e-25erf domain protein 9