PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04185g00001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 501aa    MW: 56937.4 Da    PI: 4.8426
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04185g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS268.22.7e-821184862373
                      GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgd....pmqRlaayfteALaarlarsvselykalppsetseknsseelaalk 82 
                               ++lLl  Aea+++g+l la+ +  rl+++ s + +    ++ Rla yft++L  + ++   + ++ l  +++ + +ss++++a++
  Niben101Scf04185g00001.1 118 TDLLLMGAEAIEAGNLDLASVVALRLNTILSDQENrensALDRLALYFTQGLLYKSLS---TSSHELLNQNQYQPESSSSVTAFQ 199
                               5789999******************9999666654445599**********9766555...34444444444444578888999* PP

                      GRAS  83 lfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLak 167
                               +++e+sP++kf+h+taNqaIlea++g+++vHi+Dfdi +G+QWp+L+  L +R +   slRiT+v+  +++++  +++tg+rL++
  Niben101Scf04185g00001.1 200 MLQEISPYVKFAHFTANQAILEATKGSQQVHILDFDILEGIQWPPLMVDLVERGNINSSLRITAVVV-DKNNSFHVQKTGKRLQE 283
                               ******************************************************************9.66799************ PP

                      GRAS 168 fAeelgvpfefnvlvakrledleleeL.rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse 251
                               fA+++++pf f+ +  ++ edl  e++  v+++ +l+ n++++  +++++  sl +    + + +++lsPk+vv+ve+e+  +++
  Niben101Scf04185g00001.1 284 FADSINLPFMFDQVFLTKEEDL--ENIqGVESHNNLIANVMIHQLHIPQRGSSLVK---IFFNGLRRLSPKIVVLVEEELFNSTK 363
                               *************866666655..777246669*********9999*988888888...9*******************655554 PP

                      GRAS 252 ....sFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerlee.aGFkpvpls 330
                                   sF+e f+eal++y+a+ ds+  +++     + +++E+e+lg +i ++v +  +e+ er    ekW+e l +  GF+++p+s
  Niben101Scf04185g00001.1 364 ipikSFVEFFCEALHHYTAISDSILGGFGGGYkLALRVIEKEFLGIRILDCVRQFPSEKSER----EKWSEGLYSlKGFRKIPMS 444
                               5666********************6666665538999********************96666....56***997658******** PP

                      GRAS 331 ekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                               ++++ qak+l++ ++  gy v++e+  l l+Wk+rpL+++S W
  Niben101Scf04185g00001.1 445 SSNVRQAKHLVSLFS-GGYWVQNEHCKLALCWKSRPLTTASIW 486
                               ***************.89************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.13291468IPR005202Transcription factor GRAS
PfamPF035149.5E-80118486IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MECENFKPTY INPFLEYSNL ETTFSWKNSS INPHCSIQDF VTVVNDGDIQ DYFQNDFDFI  60
DVQDVDFHVQ NSQNFSLFSS QVQVQEDTDF LNEGQKLRIY SPELKLLEDQ LMEETSITDL  120
LLMGAEAIEA GNLDLASVVA LRLNTILSDQ ENRENSALDR LALYFTQGLL YKSLSTSSHE  180
LLNQNQYQPE SSSSVTAFQM LQEISPYVKF AHFTANQAIL EATKGSQQVH ILDFDILEGI  240
QWPPLMVDLV ERGNINSSLR ITAVVVDKNN SFHVQKTGKR LQEFADSINL PFMFDQVFLT  300
KEEDLENIQG VESHNNLIAN VMIHQLHIPQ RGSSLVKIFF NGLRRLSPKI VVLVEEELFN  360
STKIPIKSFV EFFCEALHHY TAISDSILGG FGGGYKLALR VIEKEFLGIR ILDCVRQFPS  420
EKSEREKWSE GLYSLKGFRK IPMSSSNVRQ AKHLVSLFSG GYWVQNEHCK LALCWKSRPL  480
TTASIWVPTS SSSSPSTSIS F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-4312549027382Protein SCARECROW
5b3h_A8e-4312549026381Protein SCARECROW
5b3h_D8e-4312549026381Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009761269.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBLA0A1U7VG120.0A0A1U7VG12_NICSY; nodulation-signaling pathway 2 protein-like
STRINGXP_009761269.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA133661417
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.17e-46GRAS family protein