PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04132g01004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 373aa    MW: 42605.4 Da    PI: 4.4418
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04132g01004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind105.54.3e-3314102299
                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                               F+ k+ye+++d++++ ++sws+n++sf+v+++ +fa+++Lp+yFkh+nf+SF+RQLn+YgF+kv+ e+         weF+++ F
  Niben101Scf04132g01004.1  14 FIAKTYEMVDDPSTDPIVSWSSNNKSFIVWNPPDFARELLPRYFKHNNFSSFIRQLNTYGFRKVDPEQ---------WEFANEDF 89 
                               9***************************************************************9998.........******** PP

                               XXXXXXXXXXXXX CS
              HSF_DNA-bind  87 kkgkkellekikr 99 
                                ++++   e+i++
  Niben101Scf04132g01004.1  90 IRERQGYKEDIEK 102
                               8877755555544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.2E-36794IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.07E-32995IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.0E-5210103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-201437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.0E-281496IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-205264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MDEAPCSANA LPPFIAKTYE MVDDPSTDPI VSWSSNNKSF IVWNPPDFAR ELLPRYFKHN  60
NFSSFIRQLN TYGFRKVDPE QWEFANEDFI RERQGYKEDI EKLKHVNESL HLELQGHKQD  120
YQGLETQMQV FAERVQRVKH RQKNMLSILA RTINKPGLAL SLMPQLEMNE RKRRLPGNSF  180
LYNETGLEDN QVSSSEYSTR ENMDGASDLT LNKELLDQLE SSMTFWENIL CEIDQTGMRR  240
SSSLDLDESI SCADSPAISY SQLNLDIGSK ISGIDMNSEP NGITVPEVSL QEDQVVVIGT  300
ATNRPTGVND VFWEQFLTEN PGSTESDVKL EQEDIDSEKS ESKTVENGKS WWKMKSVNSL  360
TEQLGHLTPA ERT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-211110226128Heat shock factor protein 1
5d5v_B4e-211110226128Heat shock factor protein 1
5d5v_D4e-211110226128Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169174ERKRRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019253075.10.0PREDICTED: heat stress transcription factor A-4a-like
RefseqXP_019253077.10.0PREDICTED: heat stress transcription factor A-4a-like
RefseqXP_019253078.10.0PREDICTED: heat stress transcription factor A-4a-like
RefseqXP_019253079.10.0PREDICTED: heat stress transcription factor A-4a-like
RefseqXP_019253080.10.0PREDICTED: heat stress transcription factor A-4a-like
TrEMBLA0A1J6IT180.0A0A1J6IT18_NICAT; Heat stress transcription factor a-4a
STRINGXP_009590974.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34482344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-90heat shock transcription factor A4A