PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf04000g01021.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GRAS

Protein Properties

Length: 312aa MW: 35529.8 Da PI: 6.1053

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf04000g01021.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	245	3.1e-75	21	310	81	374
GRAS 81 lkl.fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetge 163 +l f++ P+ ++ h+t qa+le+v+++++vH iDf i G+QW++L+qa a+R+ ++ +++iT+++s ++ke++eet + Niben101Scf04000g01021.1 21 SHLaFHQEVPFTQVVHFTGIQAMLESVATKSKVHLIDFLIRTGVQWASLIQAAAERKdNPIEHMKITVIES---VNKERVEETVK 102 33449*************************************************955566*****...78***** PP GRAS 164 rLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh 248 L+ fA++l+ p++f+++ + ++l+ ++++++p+E l++ ++ l + e+ +le +++v++l+P+++vv+e ea++ Niben101Scf04000g01021.1 103 SLEGFANSLNFPLSFKIVFLPDRNQLTENHFDIEPDEGLVIYAAFFLRAMICEPNCLET----AMRVVRKLQPELMVVSEVEANL 183 *************9999**************************88888888....****************** PP GRAS 249 nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplseka 333 ns+ F++rf+++l yysa+fd+le + +++++r+++E + g i+n+v +eg+er+ r +l Wr ++++G+++v+lse+ Niben101Scf04000g01021.1 184 NSPMFVNRFIDSLFYYSAFFDCLEDVMKKDDQHRMTLESVTYGGGIQNIVGNEGKERVCRSVNLDVWRTFFKRFGMEEVKLSETC 268 ********************************************************************************* PP GRAS 334 akqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 qa+l++++++ + + +e+ gsl+ Wk+ p++s+SaW+ Niben101Scf04000g01021.1 269 LYQANLIIQQFAcRNSCSADENGGSLTVSWKGTPIYSTSAWK 310 ********99999999*******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	37.696	1	289	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.1E-72	21	310	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MPKPRVGRDG SICIASRFDA SHLAFHQEVP FTQVVHFTGI QAMLESVATK SKVHLIDFLI 60 RTGVQWASLI QAAAERKDNP IEHMKITVIE SVNKERVEET VKSLEGFANS LNFPLSFKIV 120 FLPDRNQLTE NHFDIEPDEG LVIYAAFFLR AMICEPNCLE TAMRVVRKLQ PELMVVSEVE 180 ANLNSPMFVN RFIDSLFYYS AFFDCLEDVM KKDDQHRMTL ESVTYGGGIQ NIVGNEGKER 240 VCRSVNLDVW RTFFKRFGME EVKLSETCLY QANLIIQQFA CRNSCSADEN GGSLTVSWKG 300 TPIYSTSAWK FH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-39	30	310	88	375	GRAS family transcription factor containing protein, expressed
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019257713.1	0.0	PREDICTED: DELLA protein RGL1-like
TrEMBL	A0A1J6JB26	0.0	A0A1J6JB26_NICAT; Della protein rgl2
STRING	XP_009628661.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13910	11	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	2e-49	RGA-like 1