PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf03987g00003.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 523aa MW: 58841.2 Da PI: 4.4682

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf03987g00003.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	46.5	1.2e-14	5	127	9	128
NAM 9 Pt.deelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratk..sgyWkatgkd 89 P+ d+e v+ +L k v g ++++ ++i+ v++y +P++L +++ +e++ y F++ +k++a+gk+ +r++ g Wk k+ Niben101Scf03987g00003.1 5 PSfDDEHVMSHLLKFVCGIPTRC-HHIRLVQLYGNkKPSELFQQL-EEKSTDYVFTQLKKTSARGKNYKRSIVggGGSWKVLDKS 87 544889999*********999.7899965497555.334566**************54434889*** PP NAM 90 kevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128 k+v++kkg ++g kk++ f + ++++ ++ W m+ey+l Niben101Scf03987g00003.1 88 KPVFDKKGCVIGFKKSFRFDDTnDHSSDSRIVWSMKEYSL 127 ***************955267777899*****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	18.156	1	154	IPR003441	NAC domain
SuperFamily	SSF101941	1.03E-16	8	153	IPR003441	NAC domain
Pfam	PF02365	2.3E-5	8	127	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 523 aa Download sequence Send to blast
MKMEPSFDDE HVMSHLLKFV CGIPTRCHHI RLVQLYGNKK PSELFQQLEE KSTDYVFTQL 60 KKTSARGKNY KRSIVGGGGS WKVLDKSKPV FDKKGCVIGF KKSFRFDDTN DHSSDSRIVW 120 SMKEYSLNDT IVKLLRQRRQ IRHEDYVVCR ITKTVNSCAS SQNVVPLAIS GENSVANVTT 180 QDPLMLGHLN YVPTSCLSQD QEKASVISWA PSPVDQFQFQ ENQESELSNF WNENECMRVD 240 SLLTEESNTA PLIQLPLIST EEAECSAAVE PTLLSPFNET FEPLTEEELA IFDNLLVQAQ 300 KDQETASVVC RITKTVNLCA RSQNVPLAIS GDNSVGNVMS QEPQMLGHLN YVPTSCLSQD 360 QEKASIISWT PSPVDQFQFQ ENQESELSNF RNENKCISVD SLLAKESNAA PLIQLPLIST 420 EEAECSAAVA PTYTALPSFN EPFEPLTEED LAFFDKSFMQ KDQETASVRP KNDIATYHKE 480 LDAYAAEILK LNPPLVPDIP QYLEDECPLF PEDFYIGPTA LWS

Sequence ? help Back to Top

Protein Sequence Length: 523 aa Download sequence Send to blast

MKMEPSFDDE HVMSHLLKFV CGIPTRCHHI RLVQLYGNKK PSELFQQLEE KSTDYVFTQL  60
KKTSARGKNY KRSIVGGGGS WKVLDKSKPV FDKKGCVIGF KKSFRFDDTN DHSSDSRIVW  120
SMKEYSLNDT IVKLLRQRRQ IRHEDYVVCR ITKTVNSCAS SQNVVPLAIS GENSVANVTT  180
QDPLMLGHLN YVPTSCLSQD QEKASVISWA PSPVDQFQFQ ENQESELSNF WNENECMRVD  240
SLLTEESNTA PLIQLPLIST EEAECSAAVE PTLLSPFNET FEPLTEEELA IFDNLLVQAQ  300
KDQETASVVC RITKTVNLCA RSQNVPLAIS GDNSVGNVMS QEPQMLGHLN YVPTSCLSQD  360
QEKASIISWT PSPVDQFQFQ ENQESELSNF RNENKCISVD SLLAKESNAA PLIQLPLIST  420
EEAECSAAVA PTYTALPSFN EPFEPLTEED LAFFDKSFMQ KDQETASVRP KNDIATYHKE  480
LDAYAAEILK LNPPLVPDIP QYLEDECPLF PEDFYIGPTA LWS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009615661.1	1e-163	PREDICTED: uncharacterized protein LOC104108353
STRING	XP_009615661.1	1e-163	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA18021	2	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04060.1	2e-07	NAC domain containing protein 46