PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf03951g02012.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | LBD | ||||||||
Protein Properties | Length: 147aa MW: 16186.5 Da PI: 6.7636 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 94.9 | 9.1e-30 | 5 | 101 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 +C aCk+lrrkC+k+C++apyf eq +++fa+vhk+FGasn +kll ++p ++r +++ +l+yeA ar+rdPv + + +q Niben101Scf03951g02012.1 5 PCGACKYLRRKCVKGCIFAPYFDTEQgMSHFAAVHKVFGASNASKLLLSIPANKRLETVITLCYEALARVRDPVLTLQEELAYVQ 89 7**********************99988**********************************************99999999888 PP DUF260 85 qqleqlkaelal 96 l++l++ ++ Niben101Scf03951g02012.1 90 ASLSTLQSASSE 101 888888876554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.269 | 4 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.7E-28 | 5 | 99 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence Send to blast |
MSSGPCGACK YLRRKCVKGC IFAPYFDTEQ GMSHFAAVHK VFGASNASKL LLSIPANKRL 60 ETVITLCYEA LARVRDPVLT LQEELAYVQA SLSTLQSASS ELAATYSNIS SVCMDPLFDT 120 TVLHHVLDQQ LENCDLHSVA RDFDSRH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-27 | 2 | 109 | 8 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-27 | 2 | 109 | 8 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009604914.1 | 1e-94 | PREDICTED: LOB domain-containing protein 19-like | ||||
Swissprot | O81322 | 8e-44 | LBD31_ARATH; LOB domain-containing protein 31 | ||||
TrEMBL | A0A1S4DMH3 | 1e-92 | A0A1S4DMH3_TOBAC; LOB domain-containing protein 19-like | ||||
STRING | XP_009604914.1 | 4e-94 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00210.1 | 2e-41 | LOB domain-containing protein 31 |