PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf03930g05036.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C3H | ||||||||
Protein Properties | Length: 263aa MW: 29465.6 Da PI: 9.5671 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.2 | 2.9e-08 | 70 | 91 | 4 | 25 |
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 ++C f r G C+yGd C++aH Niben101Scf03930g05036.1 70 PPCLQFKRWGSCSYGDECRYAH 91 89******************** PP | |||||||
2 | zf-CCCH | 19.6 | 1.6e-06 | 109 | 132 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k + C+ff + C++G++C+F H Niben101Scf03930g05036.1 109 KVKSCHFFDSGKGCPFGNKCHFLH 132 6778**999999************ PP | |||||||
3 | zf-CCCH | 34.7 | 3.1e-11 | 172 | 197 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+ C ++ rtG C yG++C+FaHg+ Niben101Scf03930g05036.1 172 KTKFCVNWERTGSCAYGSKCQFAHGK 197 566699******************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.995 | 66 | 94 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0033 | 67 | 93 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.5E-6 | 70 | 91 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-5 | 70 | 94 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.1E-6 | 71 | 91 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.2E-7 | 106 | 134 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0059 | 107 | 134 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.97E-6 | 107 | 135 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.291 | 107 | 135 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-4 | 109 | 132 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.2E-15 | 167 | 201 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2E-6 | 170 | 197 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.342 | 170 | 198 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.75E-9 | 170 | 201 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.6E-8 | 175 | 197 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MSMPANSFGI SCKRDEHFST HWPQSNTNGK KYGFNCNAEC QAFKRPRMMN SKMGPEDNRS 60 NMAMNLGPQP PCLQFKRWGS CSYGDECRYA HITGPLKSNR VEDQRNLSKV KSCHFFDSGK 120 GCPFGNKCHF LHERNQKLEG GLGFCRVSSA ISIATSGRGH KRSVELRKEL LKTKFCVNWE 180 RTGSCAYGSK CQFAHGKAEL QTLGSSNTLE PLGTSGICAP AKTGACKCRF LFKWTNVQKI 240 SQIYADWIER VQLVPLSSHT VEN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019243857.1 | 1e-173 | PREDICTED: zinc finger CCCH domain-containing protein 37-like | ||||
TrEMBL | A0A1J6IK27 | 1e-172 | A0A1J6IK27_NICAT; Zinc finger ccch domain-containing protein 39 | ||||
STRING | XP_009770534.1 | 1e-167 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13026 | 13 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 4e-21 | C3H family protein |