PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03894g04001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 428aa    MW: 48695 Da    PI: 7.0201
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03894g04001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.63.9e-12259305354
                               HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                       HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                               ++h e+Er+RR+++N++f  Lr+++P+       K++ a+ L  Av YI++L
  Niben101Scf03894g04001.1 259 KNHVEAERQRREKLNNRFYALRSVVPNV-----SKMDRASLLADAVTYINEL 305
                               589************************6.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.7E-3814166IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.59256305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.33E-17257318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.28E-13259310No hitNo description
PfamPF000101.1E-9259305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.7E-17260316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-15262311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MEDIITSTSS TNILQKQLQY IIHSRQEWWV YAIFWQASKD ANGRLIFSWG DGHFRGTKNL  60
ANSTAVRIPD VDNNVSDTEL FYMVSVPKYF IADDELIVHA YNPTSYIWLN NYHEQQLYNY  120
DRAKEAHLHG IRTLVCIPTL NGVIELGSSE IIQENWEIVQ LSRSLFGLSN SSIITPSPIN  180
YQDLFSYNFV SLGENHTVEN DSPQATDNKL KQETVYGNIS LGNSDSFENE SSTINNSNRP  240
IKRGRKSSSS KATWTEMAKN HVEAERQRRE KLNNRFYALR SVVPNVSKMD RASLLADAVT  300
YINELKAKVE ELESDKILSQ KPKRQCTNNS VQTVPSTVLN RANNSFGIEV EVKIIGLEAM  360
VRVRSPDVNY PCARLMNMLR ELELQVKHAS ISSVKNLMLQ DVVIRVTNEV ANEEVLKSVI  420
LKRLSVAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-24260317865Transcription factor MYC2
5gnj_B4e-24260317865Transcription factor MYC2
5gnj_E4e-24260317865Transcription factor MYC2
5gnj_F4e-24260317865Transcription factor MYC2
5gnj_G4e-24260317865Transcription factor MYC2
5gnj_I4e-24260317865Transcription factor MYC2
5gnj_M4e-24260317865Transcription factor MYC2
5gnj_N4e-24260317865Transcription factor MYC2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019236365.10.0PREDICTED: transcription factor MYC2-like
TrEMBLA0A1J6KKT80.0A0A1J6KKT8_NICAT; Transcription factor bhlh14
STRINGXP_009796881.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.13e-66bHLH family protein