PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03870g01016.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 318aa    MW: 36183.1 Da    PI: 5.0907
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03870g01016.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.19.8e-2163116356
                               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                               k++++t+eq++ Le+ Fe ++++  e++++LAkklgL+ rqV vWFqNrRa++k
  Niben101Scf03870g01016.1  63 KKRRLTPEQVHLLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWK 116
                               5678*************************************************9 PP
2Homeobox29.21.6e-091231423756
                               CTS-HHHHHHHHHHHHHHHH CS
                  Homeobox  37 lgLterqVkvWFqNrRakek 56 
                                gL+ rqV vWFqNrRa++k
  Niben101Scf03870g01016.1 123 XGLQPRQVAVWFQNRRARWK 142
                               589****************9 PP
3HD-ZIP_I/II100.21.9e-3262122161
               HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEk 61 
                               ekkrrl+ eqv+lLE+sFe+e+kLeperK++la++LglqprqvavWFqnrRAR+ktk lE+
  Niben101Scf03870g01016.1  62 EKKRRLTPEQVHLLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKTLER 122
                               69*********************************************************97 PP
4HD-ZIP_I/II78.98.2e-261231793692
               HD-ZIP_I/II  36 LglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                                glqprqvavWFqnrRAR+ktk lE+dy++Lk++yd+l ++ ++++k++e+L++el+
  Niben101Scf03870g01016.1 123 XGLQPRQVAVWFQNRRARWKTKTLERDYDQLKSSYDSLLSDFDSMRKDNEKLKAELS 179
                               69***************************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.25E-1951118IPR009057Homeodomain-like
PROSITE profilePS5007118.41558118IPR001356Homeobox domain
SMARTSM003893.6E-2061122IPR001356Homeobox domain
CDDcd000861.75E-1863118No hitNo description
PfamPF000466.6E-1863116IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.5E-2164121IPR009057Homeodomain-like
PRINTSPR000315.1E-68998IPR000047Helix-turn-helix motif
PROSITE patternPS00027093116IPR017970Homeobox, conserved site
PRINTSPR000315.1E-698114IPR000047Helix-turn-helix motif
PROSITE profilePS5007110.576117144IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.0E-9122151IPR009057Homeodomain-like
SuperFamilySSF466892.57E-8122155IPR009057Homeodomain-like
PfamPF000467.2E-7123142IPR001356Homeobox domain
PfamPF021837.5E-14144179IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MGSGHIFFDP SCHGNMLFLG NSDPVFRGSS MMKMENSSKK RPFFSSPEEL YDEEYYDEQS  60
PEKKRRLTPE QVHLLEKSFE TENKLEPERK TQLAKKLGLQ PRQVAVWFQN RRARWKTKTL  120
ERXGLQPRQV AVWFQNRRAR WKTKTLERDY DQLKSSYDSL LSDFDSMRKD NEKLKAELSH  180
FYSITVVSLM EKLQGKVVGE GGVTSEKCEV LEVDAMTLQV KVKAEDRLSS GSGGSAVVDE  240
HSPQLVDSGD SYFHTGHIEE YPIGAGGCNN IPPPMDGLQS EEDDGSDDGG GRGYFSNVFV  300
AAEEQQHEEG EPIGWFWS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009777424.10.0PREDICTED: homeobox-leucine zipper protein HAT5
SwissprotQ022834e-83HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A1S4CDK70.0A0A1S4CDK7_TOBAC; homeobox-leucine zipper protein HAT5-like
STRINGXP_009777424.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA78912330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-62homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]