PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03863g07002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 785aa    MW: 86910.8 Da    PI: 10.0286
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03863g07002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.41.2e-111770248
                              SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqkyl 48
                               rW t+E++ll++av+++G+++W+++a +++         +++ +c++++++++
  Niben101Scf03863g07002.1 17 SRWGTWEELLLACAVNRYGTKSWDSVAVELQkqsiapaRLLSPHNCRLKYLDLK 70
                              69************************************99**********9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007178.9E-51572IPR001005SANT/Myb domain
PfamPF002496.6E-111770IPR001005SANT/Myb domain
CDDcd001675.12E-41870No hitNo description
SuperFamilySSF473707.98E-17331446IPR001487Bromodomain
SMARTSM002974.1E-15339448IPR001487Bromodomain
Gene3DG3DSA:1.20.920.106.5E-15341448IPR001487Bromodomain
CDDcd043691.77E-13353443No hitNo description
PfamPF004398.4E-11353433IPR001487Bromodomain
PROSITE profilePS5001412.002358429IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 785 aa     Download sequence    Send to blast
MAKPDGTIEN PSEEEESRWG TWEELLLACA VNRYGTKSWD SVAVELQKQS IAPARLLSPH  60
NCRLKYLDLK RRYSNKCNGN GNVNDDDEDK EKTVCVPLLE ELRKLRVAEL RREVERYDLS  120
IVSLQLKKQR LEEERERSLQ QTENGESKSD LAKNERRGAN NEKIEETEIG IKPEDKSSPE  180
VVAADEASEE ASDKDQQSVN ESSSTDPKRS CSLKNSAEEN EDKTEPVRTV TAKTEPLQTG  240
GIKEDSDKCA EERPVREDSC NGSSDSVEKP PIGVTKVEPV SESPELVESM AESKGGEEGT  300
KENSDVQSSV SKSRKKVDDT VVGGCSSGDE REKENRSPAV KKRPVESQPL IAFLEKIRSH  360
KLGSMFERRL ESQEAENYSN FIRQHVDLEI VQTWLENGRY ISCKSKFFRD LLLLVSNAIV  420
FFKKNSSEFV AATELRQLIL KEISRTKAKS YSLSDKQTSV KSASLSQKEI TKPSDSLLLK  480
TNILTSMIVC RKRSSITAKA SASSSGGDKK REQTITRPVE KVVVDTLQQP SQLATNAGEN  540
RITKKRTRDR FTSGSASLNK KDKIRPNTTS IKNLAAVVDK NQGEGDSSSQ HLQSKSESRN  600
EQSNTDAKKR SAAYFLNRMK QSSSSNSGLL LDALKSRPLS SGSKGGSDQK KNESGTGGGR  660
KEPAFSKTHQ KKEPASSKNP EAKQAKEKGS PMKKNVGRPP KXNESGTGGW RKEPAFSKTH  720
QKKEPASSKN PEAKQAKEKG SPMKKNVGRP PKRGADPSPP SGKRSREGAE SAAIPPKQPK  780
KRSRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009760270.10.0PREDICTED: uncharacterized protein LOC104212640
TrEMBLA0A1U7VEL20.0A0A1U7VEL2_NICSY; uncharacterized protein LOC104212640
STRINGXP_009760270.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42682136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.11e-33DNA-binding bromodomain-containing protein