PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03786g04014.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 553aa    MW: 60437.4 Da    PI: 6.446
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03786g04014.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.49.4e-31314372259
                               --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++++++tYeg+Hnh+
  Niben101Scf03786g04014.1 314 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDKTILITTYEGNHNHP 372
                               7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.1E-34298374IPR003657WRKY domain
SuperFamilySSF1182908.89E-28306374IPR003657WRKY domain
PROSITE profilePS5081129.838308374IPR003657WRKY domain
SMARTSM007746.5E-37313373IPR003657WRKY domain
PfamPF031068.8E-27315372IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MANGSGLFFD PDPTSLSLQY PSSKDHHFFY KLHKLEPFLS SNNNIIESPT KNMSSSPPPT  60
TIQFPVNLIN GHDQKRPVLD EMDFFAAKED VNSCNDTDEG KEFNKPLELD FNINTGLQLL  120
TANTSTDQSI VEDGLSPASS EDTRTKTELA VLQAELERTN GENRHLRDML NQVTSNCSTL  180
QMQLTMIKQK QQHDHNEQDD KGEEIKQQYH QSSQMRPRKF MDLGRLADEP SLSSSEGRRS  240
WEQSRSPPMN IVESGSSDGE DGPAKVLSCW GPNKVPRVAG NESKSSTTVD QATEATIRKA  300
RVSVRARSEA PMITDGCQWR KYGQKMAKGN PCPRAYYRCT MAAGCPVRKQ VQRCAEDKTI  360
LITTYEGNHN HPLPPAAAAM ASTTSSAARM LLSGSMPSAD GLMSSNILAR TLLPCSSCMA  420
TISASAQFPT ITLDLTQTSN SSPFKAPSNQ FQFPFQNPHQ NSPGNPIALL PQIFGQALYN  480
QSKFSGLQMS QNLSILPSIG DTVNALTADP YFAAALAAAV TSLIGNSHHC NNVIINNTAA  540
ATTPSNNNDD NKQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-22300376176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009616884.10.0PREDICTED: probable WRKY transcription factor 31
RefseqXP_016506588.10.0PREDICTED: probable WRKY transcription factor 31
SwissprotQ9XEC31e-130WRK42_ARATH; WRKY transcription factor 42
TrEMBLA0A1S4CZL20.0A0A1S4CZL2_TOBAC; probable WRKY transcription factor 31
STRINGXP_009616884.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9452492
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22070.11e-118WRKY DNA-binding protein 31