PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf03779g06005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 248aa MW: 28759.2 Da PI: 7.6238 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.8 | 2.1e-07 | 21 | 64 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 WT+eE +l+ a++ + + +W ++a +++ g++ ++ +q Niben101Scf03779g06005.1 21 WTKEENKLFESAIAIYDENtpnRWFKVADMIP-GKSVLDVMMQYQ 64 ******************9*************.***999887777 PP | |||||||
2 | Myb_DNA-binding | 44.4 | 3.7e-14 | 110 | 154 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + ++G+g+W+ I+++m Rt+ q+ s+ qky Niben101Scf03779g06005.1 110 PWTEEEHRRFLMGLDKYGKGDWRNISKKMVISRTPTQVASHAQKY 154 8*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 6.627 | 16 | 71 | IPR017884 | SANT domain |
SMART | SM00717 | 1.5E-8 | 17 | 69 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.07E-11 | 19 | 73 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.9E-6 | 21 | 65 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.33E-7 | 21 | 66 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-12 | 101 | 159 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.106 | 103 | 159 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.0E-16 | 104 | 158 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.6E-18 | 106 | 158 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 4.7E-12 | 107 | 157 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.48E-9 | 110 | 154 | No hit | No description |
Pfam | PF00249 | 1.7E-12 | 110 | 154 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
METIFPTSSS WMIQQNKNSI WTKEENKLFE SAIAIYDENT PNRWFKVADM IPGKSVLDVM 60 MQYQELAADV CDIEAGLVPN PGYFVSSDCG LQTFRKRGRS SDQERKKGVP WTEEEHRRFL 120 MGLDKYGKGD WRNISKKMVI SRTPTQVASH AQKYYQRQLS GCKDKRRPSI HDITTFHFVA 180 DDASQNYVNS LSKEKFHKFI TTTDVVKYWN NSSDEHLMDF RSSYGSSTVA YPYEISSQSW 240 DVHGAIWD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 94 | 106 | RKRGRSSDQERKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00347 | DAP | Transfer from AT3G11280 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009766549.1 | 1e-175 | PREDICTED: transcription factor DIVARICATA-like | ||||
Refseq | XP_016501061.1 | 1e-175 | PREDICTED: transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 1e-74 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A1S4CJ87 | 1e-174 | A0A1S4CJ87_TOBAC; transcription factor DIVARICATA-like | ||||
TrEMBL | A0A1U7VVW5 | 1e-174 | A0A1U7VVW5_NICSY; transcription factor DIVARICATA-like | ||||
STRING | XP_009766549.1 | 1e-174 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA458 | 24 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11280.2 | 1e-81 | MYB family protein |
Publications ? help Back to Top | |||
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